Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_1993 |
Symbol | |
ID | 5205947 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | - |
Start bp | 2481374 |
End bp | 2482738 |
Gene Length | 1365 bp |
Protein Length | 454 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640600225 |
Product | major facilitator transporter |
Protein accession | YP_001280883 |
Protein GI | 148653790 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.0000000256386 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 6 |
Fosmid unclonability p-value | 0.0000979309 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGAATAGCA TCGAGAAGCG AGCCATTGCC GGTATAGGTG GTATCTTTGC ACTGCGTATG ATCGGCCTAT TTATGATAGT GCCGGTCTTT TCGGTTTATG GTAACAATTA TGCCCATGCC ACACCCTTAT TAATTGGTTT GGCTGTCGGT ATTTATGGGT TGGGGCAGGC CCTATTCCAA ATCCCTATGA GTATGGCAGC GGATAAATTT CCGCGCAAGC CGATGATATT TTTAGGGCTA TTATTATTTG CCATCGGCGG TGTGGTCGCT GCGACTGCCA CTGATATTTA TCAAGTCATT ATCGGTCGGG CGCTGGCAGG TAGTGGTGCA GTCTCGGCAA TTCTTATGGC ATTATTGGCC GATGTAACCC GTGAGCAGCA GCGTACCAAG GCTATGGCCA CTATGGGACT GACCATTGCG ACTTCTATTA TGCTGTCGTT TGCCATTGGA CCGATGATGG TAGCCAGCCT AGGTATCTCT GGGCTATTTT GGCTGACCGC AGTATTTGCG CTGGTTGCTA TGCTGCTGTT ATTGTTTGTG CCTACCCCGC TTAGAGTACT GCGACACAAT CTGGCCAATC AATCGATAGG GGAGCAGCTA AAAGAGGTGC TGCGTATTGG CGATTTAAAC CGGCTGCATA TCGGTATCTT TGCACTGCAT TTAACCATGA CTGCCATCTT TGTGATTGTG CCTCAGCAGT TGGCAGACGT GCTAGATTTG AGTGTGCGTC AACAGGGTAT GGTGTATTTG CCGCTGCTGT TTATTGGCTT TGCCATTGCC ATTCCCTTTA TCATTATTGC CGAAAAAAAA CGCAAAATGC GTCAGATATT CTTAGCGGCA TTAACTGTGT TGGTCGCAGC GTTTGTCTGT CTGGCGCTAG GCAGTAAGTT AAGCTATGTA TTACTGTTTG GGCTCGGTCT TTACTTTATC GGTTTTAACT TACTTGAGGC GACGATTCCC TCTTGGATTT CTAAAAAGGC ACCTGTGGCC AATAAAGCGA CGGCGATGGG TATTAACTCC TCCAGCCAGT TTTTAGGAGC CTTCTTCGGT GGGGCCTTGG GCGGTATGTT ACTTAGCCAA GGTCCGATGC TGGCCTGGGG GCTGCTCGGT GCAGTAATGG CTGTGGCGTT GGTCTTAATT CTACCGATTT CGCAGCCCCC TTACTTAACC AGTACCACGT TAGCGATCCC CAAACAGGTA GATGTCACGG CGTGGTCACA GCAAGTTATG TCAGTCGGTG GGGTGGATGA AGTGGTGGTT ATGCCCAAAG ATGGGGTGGC TTATTTAAAA CTTGATAAGC AAAAAATCGA TGATTATTCA CGACAGTTAC TGTCGCAACT TACCGAAACT AAGCTAGATA TTTAG
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Protein sequence | MNSIEKRAIA GIGGIFALRM IGLFMIVPVF SVYGNNYAHA TPLLIGLAVG IYGLGQALFQ IPMSMAADKF PRKPMIFLGL LLFAIGGVVA ATATDIYQVI IGRALAGSGA VSAILMALLA DVTREQQRTK AMATMGLTIA TSIMLSFAIG PMMVASLGIS GLFWLTAVFA LVAMLLLLFV PTPLRVLRHN LANQSIGEQL KEVLRIGDLN RLHIGIFALH LTMTAIFVIV PQQLADVLDL SVRQQGMVYL PLLFIGFAIA IPFIIIAEKK RKMRQIFLAA LTVLVAAFVC LALGSKLSYV LLFGLGLYFI GFNLLEATIP SWISKKAPVA NKATAMGINS SSQFLGAFFG GALGGMLLSQ GPMLAWGLLG AVMAVALVLI LPISQPPYLT STTLAIPKQV DVTAWSQQVM SVGGVDEVVV MPKDGVAYLK LDKQKIDDYS RQLLSQLTET KLDI
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