| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1984 |
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| Symbol | |
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| ID | 5206499 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | + |
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| Start bp | 2472266 |
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| End bp | 2473435 |
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| Gene Length | 1170 bp |
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| Protein Length | 389 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640600216 |
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| Product | tRNA pseudouridine synthase D, TruD |
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| Protein accession | YP_001280874 |
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| Protein GI | 148653781 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 40 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.00100615 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACTTCCG CTACGCCTCT GTTACCTGAA ATTACTTCCG ATCAAATCAA GCAACTGACC
CGCAGTCAAT GCCTAGCTCA GCCCCTGCCT GCCCCTATAT TAAGCGCCTG TTTTAAGCAG
TCCCCTGAAG ACTTTCAGGT AGATGAGCTG CTGGAAGTTG GTCTGTCTGG TGAAGGGGAG
CATTTGTGGC TATTGATTAA AAAGACCGCC ATGAATACCA GCTTTGTGGC CGATCAGCTT
GCTAAATGGG CCAAGATACC CAGTCGGGAT GTGGGTTACT CTGGGCTAAA AGACCGTCAT
GCGGTGACCA CCCAGTGGTT TAGCTTGCGT CTACCCAAAG GCAAGCTGCC TGATATAAGC
TTTGATGAAT TTGCCAAAGC GCACTTGACC ACTGCCACCG AATCGATAGA AGTACGACAG
CAAACCTGGC ACAGCAAAAA GCTCAATCGC GGTACGCACA AGGCCAATAG ATTTGTCATT
CGCTTAACCG ATATTGAGCT CAACCCTAAG GTGGCAGCTG CCCCTGCTAC AGTTGATGAG
ATCCTAACGC TTATCAGCAA AGAAGGGGTG CCCAACTACT TTGGTGAGCA GCGCTTTGGC
AGGCAGGGCA ACAACATTGT CAGCGCTTTG GAGTGGTTTG AAAAGGGCAC AATAAATGGC
CGTCCGCCTC ATCCAAAAAA AAGCCGTGAT GCGCAATCTT TATTACTCTC CTCAGCCCGC
AGCGCTATTT TTAATCAAAT CGTCTCAGCC AGAGTTCAGC TGGGAGGCTG GAATACTGCC
ATAGACGGCG ATGTGTTTAA TCTGGATGGA TCGGGGTCTG TGTTTTGTGT TGAGCAGATT
GATCAAGAGA TACACCAGCG ACTGGCCAGT GGCGATATTC ACCCAACTGC GCCATTGTGG
GGCATCAAAA ATGACAAAGT CAGCGAGGCT GCAAAAGCCT TAGAAGATAA AGTGGTGAGT
CAAGATGCTG TGTTACAAAG ACTGGCTCAA GGCCTTGAGA AAAAACAGTT AAAAACCATG
CGCCGCGCAA CCCGCTTAGC AGTGAGTGAT TTCAGCTGGT CATGGACAAC AGAGCAAGCG
GATAAGCCAA GTCTGGTGCT GCAATTTACC TTACCCACCG GCACCTTTGC CACCAGCGTA
CTGTCAGCTT TGGTAACTCA TTTAAAATAG
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| Protein sequence | MTSATPLLPE ITSDQIKQLT RSQCLAQPLP APILSACFKQ SPEDFQVDEL LEVGLSGEGE
HLWLLIKKTA MNTSFVADQL AKWAKIPSRD VGYSGLKDRH AVTTQWFSLR LPKGKLPDIS
FDEFAKAHLT TATESIEVRQ QTWHSKKLNR GTHKANRFVI RLTDIELNPK VAAAPATVDE
ILTLISKEGV PNYFGEQRFG RQGNNIVSAL EWFEKGTING RPPHPKKSRD AQSLLLSSAR
SAIFNQIVSA RVQLGGWNTA IDGDVFNLDG SGSVFCVEQI DQEIHQRLAS GDIHPTAPLW
GIKNDKVSEA AKALEDKVVS QDAVLQRLAQ GLEKKQLKTM RRATRLAVSD FSWSWTTEQA
DKPSLVLQFT LPTGTFATSV LSALVTHLK
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