| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1978 |
|---|
| Symbol | |
|---|
| ID | 5206493 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 2463286 |
|---|
| End bp | 2464680 |
|---|
| Gene Length | 1395 bp |
|---|
| Protein Length | 464 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640600210 |
|---|
| Product | Na+/H+ antiporter NhaC |
|---|
| Protein accession | YP_001280868 |
|---|
| Protein GI | 148653775 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2056] Predicted permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.331673 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATAAATG CGGTATTGTT GGCAGTGGTA GTCATGCTTG GGCTATCCGT GGCTCGGGTA
CACGTGGTAC TGAGCTTGCT GATTGGAGCC ATGGTAGGCG GACTGGTGGG CGGATTGGGC
GTGGATGCCA CACTAGCGGC TTTTCAAGAA GGGATAAAAA ATGGTGCCCA AATTGCACTG
TCTTATGCCT TGCTAGGCGC TTTTGCGGTG GCTATTGCCC ATTCAGGACT GCCACAGTCG
CTGTCAAATG GGGTGATTAA CCGCATTAAC AATCAACAAG CCGGCAGCAG CATCTCCTCT
ATTAAGTGGC TGCTGTTCTT GGGTTTGGTA TTGATGAGTG TGTTTAGTCA AAACCTCATT
CCCATTCACA TCGCCTTTAT TCCTCTGATT ATTCCGCCTT TGTTAGGTGT GTTTAATCGT
CTACAAGTGG ACAGACGCTT GCTGGCATGT CTGATGAGCT TTGGCTTGGT CACCACTTAT
ATGTTTATCC CTTATGGGTT TGGTGAGATT TACTTGGACC AAATCATGCT AAAAAACGTG
GGAGAGGCGG GGCTGAATGT CGATAATATT TCGGTCATGC ATGCCATGGC CATACCTGCA
CTGGGTATGT TGACCGGCCT GTTGATAGCG GTGTTTTTTA GCTATCGTAA GCCGCGTAGC
TATGCAATGA CAGCCGATGG CACCGCTATG ACAAACAATA GCATCAGTGC CAATAGCGGT
GTACCAAGTG GCCATCAAGA TACCCTAACC AATGTGGCCG CCAATGCCAT TGTGCCCAGC
CGTGGTAAGA CCCTTGTTGC GCTGTTGGCC ATTATCACCG CCTTTGTGGT GCAGTTATAC
ACTGAGTCTT TGTTATTGGG CTCGCTGTTT GGCTTTGGGA TATTTATGGC AACCGGTGTG
GTTAAGTGGA ATGAAGCTGA CAGCGTGTTT AATGACGGTA TTAAGCTGAT GGCAATGATT
GGTTTTATTA TGATTACCGC GCAAGGTTTC GCTGAGGTGA TGAAGGCCAC CGATCAGATT
GCACCGCTTG TCGATGGCGC CACCAGTCTG TTTGCCGGCA ATAAGGGTAT CGCAGCCTTT
ATCATGTTAT TAATTGGTTT GGTTGTCACC ATGGGTATTG GCTCGTCCTT TTCGACCATT
CCTATTATTG CTGCCATTTA TGTGCCGCTT TGTATCTCGC TGGGCTTCTC GCCGCTTGCC
ACAGTGGCCA TTGTCGGTAC GGCCGGCGCG CTGGGAGATG CCGGTTCACC TGCTTCAGAC
TCAACCCTAG GTCCTACCTC GGGCCTGAGT GTCGATGGCC AGCACGATCA TATTAAAGAC
AGTGTGATTC CCACCTTTTT GCACTTTAAT ATTCCGCTGC TTATCTTTGG CTGGATTGCA
GCGATGGTGC TGTAA
|
|---|
| Protein sequence | MINAVLLAVV VMLGLSVARV HVVLSLLIGA MVGGLVGGLG VDATLAAFQE GIKNGAQIAL
SYALLGAFAV AIAHSGLPQS LSNGVINRIN NQQAGSSISS IKWLLFLGLV LMSVFSQNLI
PIHIAFIPLI IPPLLGVFNR LQVDRRLLAC LMSFGLVTTY MFIPYGFGEI YLDQIMLKNV
GEAGLNVDNI SVMHAMAIPA LGMLTGLLIA VFFSYRKPRS YAMTADGTAM TNNSISANSG
VPSGHQDTLT NVAANAIVPS RGKTLVALLA IITAFVVQLY TESLLLGSLF GFGIFMATGV
VKWNEADSVF NDGIKLMAMI GFIMITAQGF AEVMKATDQI APLVDGATSL FAGNKGIAAF
IMLLIGLVVT MGIGSSFSTI PIIAAIYVPL CISLGFSPLA TVAIVGTAGA LGDAGSPASD
STLGPTSGLS VDGQHDHIKD SVIPTFLHFN IPLLIFGWIA AMVL
|
|---|
| |