| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1939 |
|---|
| Symbol | |
|---|
| ID | 5204806 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | + |
|---|
| Start bp | 2406062 |
|---|
| End bp | 2407558 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640600171 |
|---|
| Product | sodium/proline symporter |
|---|
| Protein accession | YP_001280829 |
|---|
| Protein GI | 148653736 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0591] Na+/proline symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR02121] sodium/proline symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGGAA TTGAACCTGG CGTGCTCATC TCGCTCGCCC TCTACTTTTT ACTGATGATT
GCCATCGGTA TTTGGGCCTA TTTTAAGGCC GAAAACGACT CAGAAGGCTA TATGCTGGGC
GGTCGTAACT TAAGCCCAGG GGTTGCCGCC TTATCTGCAG GCGCCTCGGA TATGTCAGGT
TGGCTATTAT TAGGCCTACC CGGCTACATG TACAGCTCAG GTGTGGTTAG TATCTGGATT
GCTTTAGGCT TAACCCTCGG CGCCTTTGCG AACTATCTCT TAGTGGCCCC AAGACTGCGT
GTCTATACAG AAGTCGCTGA CAACGCCATC ACCCTGCCCG ATTATTTCGC CAACCGTTTT
GAAGACAAGT CTCACCTGCT TCGTGTCATC TCAGCCATCG TTATTATTTT ATTCTTTACC
GTGTATACTG CAGCCAGCTT AGCCGGCGGT GGTAAATTAT TCGACAGCGC CCTAGGCATG
TCTTATAGCA CAGGCCTGTG GGTAACGGCA GGTGTGGTTG TGGCCTATAC CTTATTCGGT
GGCTTCTTAG CAGTTTCGAC CACGGATTTT GTGCAAGGCG TCATTATGCT ATTGGCGATG
ATTATTGTAC CTGTCGTGGC CTTTACAGAT TTAGGCGGTG TGGGTGCCAC AACCACAGCC
ATTCGCAATA TTGACCCCCA AATGCTTAAC ATCTTTAGCG GCATGAGCTT TTTAGGCATT
TTGTCATTGA TGGCATGGGG TTTAGGCTAT TTTGGTCAGC CACACATTAT CGTACGCTTC
ATGGCGATTC GTTCAGTAAA AGACGTGCCA ACTGCCCGTA GAATTGGTAT GAGCTGGATG
ATTGTCAGCT TAATCGGGGC ATTAATGACA GGCTTTGCTG GTCGTGCTTA TGTCCAAAAA
ACTGCCATGA CCTTAGATGA TCCAGAGACC ATCTTCTTAG TATTCACTAA CTTCTTATTC
CATCCTTTAG TCTCAGGCTT CTTGTTAGCA GCGATTTTAG CCGCCATTAT GAGTACCATA
TCCTCACAGT TACTGGTAGT GTCAAGCTCT CTAACCCGTG ATGTGTATAA ATTATTCTTT
GATAGACAGG CCCCAGAAGC GCGTCAAGTA TTGGTAGGTC GTATCTCTGT TGTCGTGGTA
GCTTTGGTAT CTATTTTCTT AGCTTCCGAC CCTGACAGCT CAGTATTATC GCTTGTGTCT
AACGCATGGG CAGGCTTTGG TGCTGCCTTT GGTCCGTTGG TTATTATTAG CTTAATGTGG
AAACGTATGA ACCGTAATGG TGCGCTAGCA GGTATGATTG TCGGTGCCCT AACCGTGATT
ATTTGGGTCT ATGCAGGCAT ACAAACTCCT GATGGCGTCG CTTTAAATGA CTGGTTATAT
GCCATTATCC CAGGCTTTAT TTTAAGCTCT ATTGCTATTG TGGTTGTCAG CTTGGCCACT
GCTGCACCAA GTGCCAAAAT TCAAGCCAAA TTTGAAGAGA TGGAAACCAA TCTATAA
|
|---|
| Protein sequence | MNGIEPGVLI SLALYFLLMI AIGIWAYFKA ENDSEGYMLG GRNLSPGVAA LSAGASDMSG
WLLLGLPGYM YSSGVVSIWI ALGLTLGAFA NYLLVAPRLR VYTEVADNAI TLPDYFANRF
EDKSHLLRVI SAIVIILFFT VYTAASLAGG GKLFDSALGM SYSTGLWVTA GVVVAYTLFG
GFLAVSTTDF VQGVIMLLAM IIVPVVAFTD LGGVGATTTA IRNIDPQMLN IFSGMSFLGI
LSLMAWGLGY FGQPHIIVRF MAIRSVKDVP TARRIGMSWM IVSLIGALMT GFAGRAYVQK
TAMTLDDPET IFLVFTNFLF HPLVSGFLLA AILAAIMSTI SSQLLVVSSS LTRDVYKLFF
DRQAPEARQV LVGRISVVVV ALVSIFLASD PDSSVLSLVS NAWAGFGAAF GPLVIISLMW
KRMNRNGALA GMIVGALTVI IWVYAGIQTP DGVALNDWLY AIIPGFILSS IAIVVVSLAT
AAPSAKIQAK FEEMETNL
|
|---|
| |