Gene PsycPRwf_1938 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsycPRwf_1938 
Symbol 
ID5204805 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter sp. PRwf-1 
KingdomBacteria 
Replicon accessionNC_009524 
Strand
Start bp2405289 
End bp2405990 
Gene Length702 bp 
Protein Length233 aa 
Translation table11 
GC content40% 
IMG OID640600170 
ProductIS1 transposase 
Protein accessionYP_001280828 
Protein GI148653735 
COG category[L] Replication, recombination and repair 
COG ID[COG1662] Transposase and inactivated derivatives, IS1 family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones29 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCACATCA CACTATACAT CAAATGCCCA GCCTGTCTAA GTGACAATAT AAAGAAAAAT 
GGCTTCAAAA GCTATGGTAA ACAAAACTAT AAATGCAAAG ACTGCAAACG GCAGTTTATT
GGAGACCATG CCTTAACGTA CCAAGGATGT CACTCCCAAA AAGATAGCAA AATACGATAT
CTTATGGTTC GAGGCAGTGG CATAAAAGAC ATCGCTTGCG TTGAGAGAAT CAGCAAAGGC
AAAGTACTAG CCACCCTAAA AAAGTGTCAC TACCCAATAA CCCCCAAGCA AAGGCAATAC
GACTGTCTTG AAATTGATGA GCTTTGGACA TTCGTAGGTA AAAAAACCAA CAAACAATGG
CTAATTTATG CCTATCACCG TGACACAGGT GAAATTGTTG CCTATGTGTG GGGAAAACGA
GACCTTAACA CTGTCAAAAA GCTTAAAGCT AAGCTGAAAG CCCTAGGCGT AAGTTGTGCT
AGAATCGCTA GTGATACCTG GGATAGCTTT GTTACTGGTT TTAAGGGCTT TACCCAAGTC
ATTGGCAAGT TTTTCACGGT CGGCATTGAA GGTAATAATT GCACTATCAG ACATCGAGTA
AGGCGAGCAT TTAGGCGAAG TTGTAACTTT TCTAAAAAAC TGGAAAATCA CTTTAAAGCC
TTTGATTTAG CTTTCTTTTA CATCAATCAT GGGTATGTTT AA
 
Protein sequence
MHITLYIKCP ACLSDNIKKN GFKSYGKQNY KCKDCKRQFI GDHALTYQGC HSQKDSKIRY 
LMVRGSGIKD IACVERISKG KVLATLKKCH YPITPKQRQY DCLEIDELWT FVGKKTNKQW
LIYAYHRDTG EIVAYVWGKR DLNTVKKLKA KLKALGVSCA RIASDTWDSF VTGFKGFTQV
IGKFFTVGIE GNNCTIRHRV RRAFRRSCNF SKKLENHFKA FDLAFFYINH GYV