| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1919 |
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| Symbol | |
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| ID | 5205236 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | + |
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| Start bp | 2383299 |
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| End bp | 2385551 |
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| Gene Length | 2253 bp |
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| Protein Length | 750 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640600151 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001280809 |
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| Protein GI | 148653716 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCCAAAG ATCCAAATGA GCCTCAACAA ACAAAAGAGC CATTGGCAAC CGACTCATCC
AATCATCAGC ACTCTGAATC GAGCGCTCAG TCTGAACCCA AAACGCCTAC CAAAGCCTCA
CGCACCCCCT TTGAGCGCAG CCAATTTGGT GGCACTCAGC GCACAGCCAA ACCCAGTGAC
GATGATCGCC CCCTCTCCCG TAGCGACCTA AAAAAAGGCG CACAAGAGAT GTCCACGCAC
AGCGTTGCAC ACGTGAATTG GAGTGTGCTC ATCATCTCCT CACTGATTAT TACTATGTTT
TCATTATGGG CTATCTTTTT ACCCAAAATA GCTAGCACCA CAATGAAAAT GGTTGTGGGC
TGGATTGCCA CCAATTTAGG CTGGTATTAC GTCATCACCA TGGTGCTGGT GATTGGCTTT
GTGATTTGGG TGGCTTTGTC AAAAAATGGC AGTGTACGCC TTGGCCCAGA TGACTCTCGT
CCGCAATATA AGCTAGGCAC TTGGGCGGCC ATGCTATTTG CTGCTGGCGT CGGCATCGAT
ATGCTCTTCT TCTCCGTGAC CGGTCCAGTG GTTCAATATC TCACACCACC AACCGGCGAG
GGCGCAAGCG CAGAGGCGAT GCAAAACGCT GTCGTCTGGA CCATGTTCCA TTACGGTATT
GCTGGGTGGT CAGTGTATGC GCTGCTTGGT ATGGCCATGG GCTACTTTGC TTATCGCTGG
AACATGCCTT TGTCACTGAG AGCTGCGTTA TACCCGCTGC TGGGCAAACG GGTGAATGGT
CCGATTGGGC ATGCAATTAG TACCATCTCA TTAGTAGGTA CCGTATTTGG GGTGGCCACC
ACCATGGGCA TCGGTGTGGT GCTATTAAAT GTTGGCTTCT CTAAACTATT TGGGCTACCA
GAGGGACTGG CTTTACAAAT ATCGTTAGTC ATTGGCGCGG TGATATTGAC GATTCTGTCG
ACCACTTCTG GCGTTGATCG CGGCGTACGC TGGATATCTG AGCTCAATTT GTGGAGCGCG
GTAGCAATGA TGGTGTTTAT CCTATTTGCC GGTCAGACCG CCTTCTTGCT AAATGGCCTG
GTCGAAAACT TGGGCCAATT CTTTGTCACC TTGCCAGCAC GCATGTTCCA AACCTTTGTC
TATGAGCCTG GCAGCAGCGA TTGGATGGGC AGCTGGACCT TATTCTTTTG GGCGTTTTGG
TTGGCTTGGG GGCCGTTTGT TGGCGTGTTC TTAGCCCGTA TCTCACGCGG CCGAACTTTA
CGTGAGTTTG TGATAGCTGC CATTACCATT CCTGTGTTAT GCGACTTTAT TATTGTCTCA
TTCTTCGGCA ACTCAGCCCT TTATGAGGTG GTGTTCAATG GCAATACCGA GTTTGCCGCA
CTGGCTGTCG CAAATCCAGA ACAGGGCTGG TATGCCCTAC TCGAGCTGTT TCCCGGCGCG
CCTTTTTTGG TTGCCTTAGC CACCTTATCA GGCCTACTGT TTTATATCAC CAGCGCCAAC
TCAGGTGCGA TGGTGATGTC AAACTTCTCG ACCTCTATTC CCGACCCTGC CGAAGATGGG
CCAAAATGGC TGCGTATATT CTGGGCGGTG TTGACCGCGG TATCAACCAT CTCAATGCTA
ATTGCTGGCG GTGTCATCAC GATGGAATAC GCCACCTTAA TATTCGCCTT ACCGGTGACC
ATTATTGCTT ATTTGGTCAT GTTCTCGTTT TATAAAGCAC TCAAAATTGA GCGTGCTGAA
AACGAAGGTA AAGTATTAAG ACGCCCAACT GTCGCACCCA GTGGCAGCAC CATTCCTGAG
CGCTCTTGGA AACAACGCTT GGGACAGATG CTCACCTATC CCTCTAAGCG TGAGGCTATG
CAGTTTTTGG ATCGTGTGGT TCGTCCTGCG CTGTCTGATG TGGCCAATGA GTTTGAGCGT
CAAGGCTATC AGGTTGACCG TCATAGCATC CCAAATGTGG GTAACAGCGA TGACTCTGAG
CTTGCCGGCC CTATTCTTAG TGTCTTCACT GACGCACAAG ACAAGTTCTT CTATCAAGTC
ACCGCGGTGA AGATACCGGC ACCAACATTT AGTGGTAAAG TTGCGCCCAA TACGGATACC
TATTATCGCT TGGAGGTGAC TACTCAAACG GGATCTGGTG GTTACGATCT GATGGGACTG
ACCAAACAGC AGGTGATTGA TGATGTGCTT GAACAATATG AGGCGTATTT GACGTTCTTG
AGTACGCCAG CTTCTGATAG CCATCATTTA TAG
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| Protein sequence | MAKDPNEPQQ TKEPLATDSS NHQHSESSAQ SEPKTPTKAS RTPFERSQFG GTQRTAKPSD
DDRPLSRSDL KKGAQEMSTH SVAHVNWSVL IISSLIITMF SLWAIFLPKI ASTTMKMVVG
WIATNLGWYY VITMVLVIGF VIWVALSKNG SVRLGPDDSR PQYKLGTWAA MLFAAGVGID
MLFFSVTGPV VQYLTPPTGE GASAEAMQNA VVWTMFHYGI AGWSVYALLG MAMGYFAYRW
NMPLSLRAAL YPLLGKRVNG PIGHAISTIS LVGTVFGVAT TMGIGVVLLN VGFSKLFGLP
EGLALQISLV IGAVILTILS TTSGVDRGVR WISELNLWSA VAMMVFILFA GQTAFLLNGL
VENLGQFFVT LPARMFQTFV YEPGSSDWMG SWTLFFWAFW LAWGPFVGVF LARISRGRTL
REFVIAAITI PVLCDFIIVS FFGNSALYEV VFNGNTEFAA LAVANPEQGW YALLELFPGA
PFLVALATLS GLLFYITSAN SGAMVMSNFS TSIPDPAEDG PKWLRIFWAV LTAVSTISML
IAGGVITMEY ATLIFALPVT IIAYLVMFSF YKALKIERAE NEGKVLRRPT VAPSGSTIPE
RSWKQRLGQM LTYPSKREAM QFLDRVVRPA LSDVANEFER QGYQVDRHSI PNVGNSDDSE
LAGPILSVFT DAQDKFFYQV TAVKIPAPTF SGKVAPNTDT YYRLEVTTQT GSGGYDLMGL
TKQQVIDDVL EQYEAYLTFL STPASDSHHL
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