| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1798 |
|---|
| Symbol | |
|---|
| ID | 5205065 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 2230776 |
|---|
| End bp | 2232011 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640600023 |
|---|
| Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| Protein accession | YP_001280688 |
|---|
| Protein GI | 148653595 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0740981 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAAC GCATTGCCGT ACTCGGGGCA ACCGGCTCCA TCGGTGACAG CACTTTGTCT
ATACTAGCGG CTCACCCTGA ACATTATCAA GTTTATGCCT TATCCGGTCA TGGCCGTTTA
GACAAGTTAT TTGAATTGTG TCAGCAGTTT CGTCCTAGCC GTGTGGCAGT ACCAGAGAAT
AAGGTAGATG ATTTTGCCAC ACGTTTAGCC GCCGCTCAGA TAGCTTGTGA GGTGGTGGGC
GGACAAGCTG GCCTTGATGA TATTGCGCTA GACCCTCAAG TGGATACGGT GGTTGCGGCC
ATTGTGGGCG CAGCAGGGCT TGCCTCAACT TTGAGTGCGG CCAAAGCTGG TAAACGGGTG
CTACTGGCCA ATAAAGAGGC GCTAGTGATG GCCGGCAGCT TGATGATGCA AGCCGTACGC
GACAATGGCG CTACCTTATT GCCGCTAGAT TCTGAGCACA ATGCGATCTT TCAATGTCTG
CCACCTCAAA TACAACAAAA TAATACCGCC ATTCACGACG CCAGTCATGG GGTAAAAAAA
CTGTGGTTGA CTGCCTCAGG GGGACCGTTT TTAAATAAAA CTTGGGAGCA GATGCAGGCG
GCCAGCGTGA GCGAAGCGGT CAAGCACCCC AACTGGTCTA TGGGGCAAAA GATATCGGTT
GATTCAGCCA CTATGATGAA TAAAGGGCTT GAGCTGATTG AAGCTTGTCA TTTATTTGAT
TTAGCAGAAT CACAAATCAA TGTGGTTATC CATCCGCAAA GCATCATTCA CTCTTTGGTG
GAGTACTGTG ATGGCAGCTT CTTGGCACAG ATGGGCAGCC CTGATATGCG CACGCCTATT
GCCCATGCTC TGGCTTATCC CAATCGCATA AGCGCCGGTG TTGAATCTTT AGATTTATAT
CAGCTGTCGT CTTTAGAATT TATTAAACCA GATTTGAAAA AATTTGCTTG TCTAAAACTG
GCCCGTGAGG CCATGCAGTC AGGGCAGGCG GCCAGCATCA CACTTAACGC TGCCAATGAA
GTGGCGGTAG AGGCATTTAT AAAACAGCAA GTTTCATTAA CCGACATTGC ATTGATTAAT
GCTCAGGTAT TAGACAAGAT GCTTGGCAAA GATAAGTCCG TTGCGGGCCA TGCTGCTATC
AGCGTTCGCC AAATAACTGA GTTAAATGAT ATTTTGATGA TAGATAAAAT TGCTCGTGAG
CAAGCCCAAC TAGAGGTTAT GGCATGTCGC AATTAA
|
|---|
| Protein sequence | MTQRIAVLGA TGSIGDSTLS ILAAHPEHYQ VYALSGHGRL DKLFELCQQF RPSRVAVPEN
KVDDFATRLA AAQIACEVVG GQAGLDDIAL DPQVDTVVAA IVGAAGLAST LSAAKAGKRV
LLANKEALVM AGSLMMQAVR DNGATLLPLD SEHNAIFQCL PPQIQQNNTA IHDASHGVKK
LWLTASGGPF LNKTWEQMQA ASVSEAVKHP NWSMGQKISV DSATMMNKGL ELIEACHLFD
LAESQINVVI HPQSIIHSLV EYCDGSFLAQ MGSPDMRTPI AHALAYPNRI SAGVESLDLY
QLSSLEFIKP DLKKFACLKL AREAMQSGQA ASITLNAANE VAVEAFIKQQ VSLTDIALIN
AQVLDKMLGK DKSVAGHAAI SVRQITELND ILMIDKIARE QAQLEVMACR N
|
|---|
| |