| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1797 |
|---|
| Symbol | |
|---|
| ID | 5205064 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 2229349 |
|---|
| End bp | 2230788 |
|---|
| Gene Length | 1440 bp |
|---|
| Protein Length | 479 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640600022 |
|---|
| Product | putative membrane-associated zinc metalloprotease |
|---|
| Protein accession | YP_001280687 |
|---|
| Protein GI | 148653594 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0750] Predicted membrane-associated Zn-dependent proteases 1 |
|---|
| TIGRFAM ID | [TIGR00054] RIP metalloprotease RseP |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.88903 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGCAAT TAATGACCAT GTTATTGTTC TTTTTGGCTT TTGTGGCCAT ATTAGGGCCA
CTGGTCGCTC TGCACGAGTG GGGGCACTAT ATTGTGGCAC GTATGTGCGG CGTAAAAGTG
CTGACTTACT CTATCGGCTT TGGGCCAAAG CTTGCCAGCT GGACCAGCAA AAAAACCGGT
ATTAATTATC GTCTCTCAGC ACTGCCGTTA GGCGGCTATG TGAAGATGCT AGATGAGCGA
GAAGGGGCAG TGGCTGAGCA TGAAAAGCAC TTGGCCTTTA ATAATCAGCA TCCGCTAAAA
AAGATTGCTA TTGTGGCGGC GGGGCCCGTG ATGAATTTTA TCATCGCCAT TGCGCTGTTC
TCAGTGCTGT TTTTGGTGCC AAGCGAGCAG CTTAATACCC GAATAGGCTC AATTTTACCG
GACACGCCGG CCGCTACCGT TAACTTGCCC AAAGGCGACA AAATTATTGC CGTTGACGGA
CACAAGGTTC AAACTTGGGA AGAGATTAAT TACCGCTTGG CCGATCGTAT GGGTGAAAGC
GGTGCCGTGG GGGTTACCTT ACAACAAGTC GCGCCAAGCA CCGATACCCA GACAGCGGCG
CTCTCCTATG CTGCACGCTC TGAGACGATG CAGGTTGAGA TACCCATTAA GAACTTTATG
CAGGGCGAAG ACTCAGGAAA AGACACGTTA ACCAGTCTTG GGGTGATGCC TTGGCAGCCG
CACATTGAGC CCATCATCGG TCAATTGACT CAGGATGGTG CCGCCATTCG TCAGGGTATG
AAGGTCGGCG ATAAGATAGT GGCCATCAAT GATCAGCCTA TTAATGATTG GCTGGATGCG
ACCCGTATTA TCCGTGCCAA TCCAGAAACC TTGCTAAGCT TCAAGGTGCT ACGAAAGGAT
GCGCAAGGAC TTGAAAAACC TGTCATGCTT CAAATTATGC CCCAAGGCAA AAAAGCGACC
GCCGGTCAGA CATATGGTCA AATTGGGGCA GGCGTGAGCC CGGTTGAGAT TGTAGTACCC
GATGATTATA AAACGATGGT ATCCTACGAC CCTATCAGTG CAGTAGGTAA AGCCTTTGCT
AAGACCGGTC AGCTGGCGAC CATGACCTTA AATTCTATGG GTAAAATGAT CACAGGTAAG
GTGGGACTTG ATAACTTATC CGGTCCAATA ACCATTGCCG TTATCAGTAA ACAAAGCTTT
GAAATCAGTT GGGAGCAAGT GCTGGCCAAC GCCGGCCTTA TCAGCCTAAG CTTGGCTGTG
CTAAATCTGC TACCCATTCC GGTATTAGAT GGCGGTCACT TATTATATTA CTTAATAGAG
CTGATTCGAG GTAAGCCGGT GTCAGAAAGA ATGCAAATTA TTGGCTTTAA TATGGGCTTT
TTGTTCTTGC TGGCGTTTAT GATATTGGCA ATTACCAATG ACTTTAGTCG TTATTTTTAA
|
|---|
| Protein sequence | MSQLMTMLLF FLAFVAILGP LVALHEWGHY IVARMCGVKV LTYSIGFGPK LASWTSKKTG
INYRLSALPL GGYVKMLDER EGAVAEHEKH LAFNNQHPLK KIAIVAAGPV MNFIIAIALF
SVLFLVPSEQ LNTRIGSILP DTPAATVNLP KGDKIIAVDG HKVQTWEEIN YRLADRMGES
GAVGVTLQQV APSTDTQTAA LSYAARSETM QVEIPIKNFM QGEDSGKDTL TSLGVMPWQP
HIEPIIGQLT QDGAAIRQGM KVGDKIVAIN DQPINDWLDA TRIIRANPET LLSFKVLRKD
AQGLEKPVML QIMPQGKKAT AGQTYGQIGA GVSPVEIVVP DDYKTMVSYD PISAVGKAFA
KTGQLATMTL NSMGKMITGK VGLDNLSGPI TIAVISKQSF EISWEQVLAN AGLISLSLAV
LNLLPIPVLD GGHLLYYLIE LIRGKPVSER MQIIGFNMGF LFLLAFMILA ITNDFSRYF
|
|---|
| |