| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1795 |
|---|
| Symbol | lpxD |
|---|
| ID | 5205062 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 2225537 |
|---|
| End bp | 2226607 |
|---|
| Gene Length | 1071 bp |
|---|
| Protein Length | 356 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640600020 |
|---|
| Product | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
|---|
| Protein accession | YP_001280685 |
|---|
| Protein GI | 148653592 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1044] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
|---|
| TIGRFAM ID | [TIGR01853] UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00000230889 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCATA TAGACTCCAT AAGCCCCGCT AAGCCGTCTG TCACACTGGC TGATGTCATT
GCTGCCATCA CCGTGCGTCA GCCTGTCTTG AACCAGTCGC AGCTAACCGC TGAGCAGTTA
CAAATAATGC TCACAGGTAT CGGCAGCTTA GATGAGGCCA GTACAGCACA GATAAGTTTT
TTAAATGACA AAGCCTATGC GTCGGCACTG CCCAGCACAC AGGCCGCTGT GGTACTGGTG
GCGCAAGACA GTGCCAGTGC GGTGCCAGAT CATAGTGTGG CTGTGGTGGT CGCCTCTCCT
TATGCGGCCT ATGCCAGTGC CACGCATCTG TTTGAGCATC AGGCTTTAGA TGCGAATGCC
GCGACCTTTA TTCATCCGAC AGCGCAAGTG TCCAGCAGTG CGCTACTGGG TGAGGGCGTG
TCTATTGGGC CATTTTGTGT GGTGGGTGAG CAGGTAAAAA TTGGCTCAGG TACTCGGCTG
CATGCCCAAG TACACATTGA GCCGCACGCC ATCATAGGCG ATAACTGTGA GCTGTATCCG
CAGGTATTTA TTGGTCATGA TACCCAGATG GGCGATCAAG TTCGCATTCA TGCAGGCGCC
AGTGTGGGCT CAGAAGGCTT TGGCTTTGCC CCTTTAGGCA ATACTGCCGT TCAGGGCTGG
GAGCGTATTG TGCAATTAGG ACGCGTCGTC ATCGGCAACA AAGTACGCAT TGGCAGTAAC
ACGTGTATCG ACCGTGGGGC TATTGGCGAT ACCCTCATTG AAGATAATGT CATTATAGAT
AATTTGGTAC AAATTGGTCA TAATGTGAAA GTTGGTGCGG GTACTGCCAT TGCCGGTAAT
GCCGGTATTG CTGGTAGCGT TATCATAGGC AAAAGCTGTA TGATAGGCGG TGGTGTGGGT
ATTGCCGGCC ACCTACAGAT AGCTGATGGC GTGGTATTAA CAGGCATGAC ACTGGTAACA
AAATCCATTA AAAAGCCTGG TGTCTACTCT TCAGGCGTGG CTGCTATGCC CGCCATGGAT
TGGCGCCGTG CTATGGTAAA ATTGCGCGCG TTAGGAAAAA AAGACAATTA A
|
|---|
| Protein sequence | MSHIDSISPA KPSVTLADVI AAITVRQPVL NQSQLTAEQL QIMLTGIGSL DEASTAQISF
LNDKAYASAL PSTQAAVVLV AQDSASAVPD HSVAVVVASP YAAYASATHL FEHQALDANA
ATFIHPTAQV SSSALLGEGV SIGPFCVVGE QVKIGSGTRL HAQVHIEPHA IIGDNCELYP
QVFIGHDTQM GDQVRIHAGA SVGSEGFGFA PLGNTAVQGW ERIVQLGRVV IGNKVRIGSN
TCIDRGAIGD TLIEDNVIID NLVQIGHNVK VGAGTAIAGN AGIAGSVIIG KSCMIGGGVG
IAGHLQIADG VVLTGMTLVT KSIKKPGVYS SGVAAMPAMD WRRAMVKLRA LGKKDN
|
|---|
| |