| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1744 |
|---|
| Symbol | |
|---|
| ID | 5205732 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | + |
|---|
| Start bp | 2157964 |
|---|
| End bp | 2159454 |
|---|
| Gene Length | 1491 bp |
|---|
| Protein Length | 496 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 640599969 |
|---|
| Product | cbb3-type cytochrome c oxidase subunit I |
|---|
| Protein accession | YP_001280634 |
|---|
| Protein GI | 148653541 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG3278] Cbb3-type cytochrome oxidase, subunit 1 |
|---|
| TIGRFAM ID | [TIGR00780] cytochrome c oxidase, cbb3-type, subunit I |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0654781 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTATAA ATAACACAGC AGTCTCTCCA GTCGATCGTG ATTACGAAAT CACTGTTGTC
AGATATTTTA CTATCATGAC AATCGTCTGG GGGATTATAG GCATGAGTCT TGGGGTGTTT
ATCGCCTCAC AGTTAGCTTG GCCTGCCCTT AACTTTGATA TCCCCTGGCT AACTTTTAGC
CGTTTAAGAC CGCTGCACAC TAACGCGGTT ATTTTTGCGT TTGGTGGCTC TGCTTTATTT
GCAACTTCCT ACTACATCGT ACAGCGTACT TGTAAAACCA GACTTTTCGC GCCTTATTTA
GCGTGGTTTA CCTTCTGGGG TTGGCAAGCC GTTATTGTGT CTGCGGTTAT CACCCTACCT
TTAGGTATCA CCTCTACTAA AGAGTATGCG GAACTTGAGT GGCCAATTGA CATCTTAATT
GCTGTTGTTT GGATCTCTTA CGCTATCGTT TTCTTCGGTA CACTTATTAA ACGTAAGACC
TCACATATCT ATGTGGCGAA CTGGTTCTTT GCTGCTTTCA TTATCACTAT TGCTTTACTT
CATATTGTAA ACAGCATGGC CATTCCAGTA GGCTTATTTA AGTCGTACTC ATTATTTGGT
GGTGCTACCG ATGCTATGGT TCAGTGGTGG TATGGTCACA ACGCAGTAGG CTTCTACTTA
ACGGCAGCCT TCTTGGGTAT GATGTACTAC TTCGTACCGG TACAGATTGG CCGTCCTATT
TATTCATACC GTCTATCTAT TGTACACTTC TGGGCGCTTA TCGCCTCGTA CATGTGGGCC
GGTGGACACC ATTTACACTA CTCAGCACTT CCTGACTGGA CTCAGTCTTT GGCGATGGTT
TTCTCTGTTA TCTTATTCGC ACCGTCATGG GGTGGTATGA TTAACGGTGT ACTAACGCTT
TCTGGTAGCT GGGACAAATT ACGTACTGAC CCTATCATTC GCTTCTTGAT TGTTGCTTTA
TCGTTCTACG CGATGTCAAC TTTCGAAGGC CCAATGATGT CTATCAAAAC TGTGAATGCT
TTATCGCATA ACACTGACTG GACAGTAGGT CACGTACACT CAGGTGCGCT AGGTTGGGTA
GGTTTAATTA CCATGGGTTC TTTATATGTG TTAATCCCAC GCATATTTAA TAAGCCTAAA
ATGTACTCTA TTAGTTTAAT TAATACTCAC TTCTGGCTTG CAACTGCTGG TACGATTTTC
TACATCGTTT CTATGTGGAT TTCAGGTATT GGTCAAGGCA TGATGTGGCG TCAAACAAAC
CCAGATGGAA CGCTTGCTTA CAACTTTATT GAAACAGTAA CGTTCTCACA TTATCCGTAC
ATCGGTCGTG CCTTCGGTGG TTTGTTATAC GTCAGTGGTA TGTTTGTGAT GGCTTATAAT
GCTTATAAGA CGATCAAAAT GCCAAGTGCT CGTCCTGTGG ATGAAGCCGA TCCAACAAAT
CATAGCCCCA TCGTCAATGA TGACGAAGAC ACTCAGCCTG TTAACGTGTA A
|
|---|
| Protein sequence | MSINNTAVSP VDRDYEITVV RYFTIMTIVW GIIGMSLGVF IASQLAWPAL NFDIPWLTFS
RLRPLHTNAV IFAFGGSALF ATSYYIVQRT CKTRLFAPYL AWFTFWGWQA VIVSAVITLP
LGITSTKEYA ELEWPIDILI AVVWISYAIV FFGTLIKRKT SHIYVANWFF AAFIITIALL
HIVNSMAIPV GLFKSYSLFG GATDAMVQWW YGHNAVGFYL TAAFLGMMYY FVPVQIGRPI
YSYRLSIVHF WALIASYMWA GGHHLHYSAL PDWTQSLAMV FSVILFAPSW GGMINGVLTL
SGSWDKLRTD PIIRFLIVAL SFYAMSTFEG PMMSIKTVNA LSHNTDWTVG HVHSGALGWV
GLITMGSLYV LIPRIFNKPK MYSISLINTH FWLATAGTIF YIVSMWISGI GQGMMWRQTN
PDGTLAYNFI ETVTFSHYPY IGRAFGGLLY VSGMFVMAYN AYKTIKMPSA RPVDEADPTN
HSPIVNDDED TQPVNV
|
|---|
| |