| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1731 |
|---|
| Symbol | |
|---|
| ID | 5205998 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | + |
|---|
| Start bp | 2140622 |
|---|
| End bp | 2141551 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 640599956 |
|---|
| Product | 6-phosphogluconate dehydrogenase, NAD-binding |
|---|
| Protein accession | YP_001280621 |
|---|
| Protein GI | 148653528 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG2084] 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.00369666 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCTA CCCCTGATAC GTTTGCGCCT CGCAGTGCTG TCCCTACCTC AGTAAGCTTC
ATCGGCCTAG GTGCTATGGG GCACCACATG GCCAAGCACT TAGTCGGTTC GTTTGATACA
GTGATGGTCT ATAATCGAAA TTTTGATAAG GCCACTGCGC ACGCCGCAGA GTTTGGCACC
CAAGCCGTCA GCCTAGAGCA AGCGGTGAGC GCCGATGTCA TTTTCTCCTG CCTGCCCACC
AGTCAAGTAG TCGATGACCT TATTGAACAA GCCTTGCCAC ACCTTAACGA TGGCAGTGTG
TGGGTAGACT GTACCAGCGG TGTACCTGAG AACGCCAAGG CCAGTCAGGC TAAGCTTAAT
GCTGCGGGCT GTGAGTTTTT GGATGCGCCT GTCTCTGGCC AAACCTCAGG GGCTGACAGC
GGTACGTTAA CGGTGATGGT CGGCGGCTCA GCCAAAGCGT TGGCTTATGC TAAGAGCGCC
ATCGACTGCT TTGCTGGTCT GATTGTCCAT GTCGGTGACT CGGGGGCGGG TTTTGCGGTC
AAAGCGGTCA ATAATACCTT ATTTGCCATT AATGCTTGGG CGGCTGTAGA AGGGTTATCG
GTGTTAAAGG CGCATGGCGT CAACCCAAGT GATGCCTTAG CCTGCATCAA TAAAGCCAGT
GGTCAAAGTT TTGCCACTCT CGTCACTTTG CCAGATCGCA TTGTTAATCA AACCTATCCT
AAGACCTTTA CCATCGACTT AATGGCCAAA GACTGCGGTA TTGCCATTGA TTTACAAACC
GAAAAACAAG TGCCTACTCC GGTTATGGCG CAAGTAGCAA GCCTAGTGCG TGCCGCCAGC
AATCAATATG AGCCCGGCTC TGCTGACTTT TCAGAGTTTG CTAAGTTTTA TCAGCTGATG
AGCGGCATTA CTTTAAAAGA TAACCATTAA
|
|---|
| Protein sequence | MSSTPDTFAP RSAVPTSVSF IGLGAMGHHM AKHLVGSFDT VMVYNRNFDK ATAHAAEFGT
QAVSLEQAVS ADVIFSCLPT SQVVDDLIEQ ALPHLNDGSV WVDCTSGVPE NAKASQAKLN
AAGCEFLDAP VSGQTSGADS GTLTVMVGGS AKALAYAKSA IDCFAGLIVH VGDSGAGFAV
KAVNNTLFAI NAWAAVEGLS VLKAHGVNPS DALACINKAS GQSFATLVTL PDRIVNQTYP
KTFTIDLMAK DCGIAIDLQT EKQVPTPVMA QVASLVRAAS NQYEPGSADF SEFAKFYQLM
SGITLKDNH
|
|---|
| |