Gene PsycPRwf_1636 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsycPRwf_1636 
Symbol 
ID5205894 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter sp. PRwf-1 
KingdomBacteria 
Replicon accessionNC_009524 
Strand
Start bp2022248 
End bp2026063 
Gene Length3816 bp 
Protein Length1271 aa 
Translation table11 
GC content48% 
IMG OID640599858 
Producttranscription-repair coupling factor 
Protein accessionYP_001280527 
Protein GI148653434 
COG category[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG1197] Transcription-repair coupling factor (superfamily II helicase) 
TIGRFAM ID[TIGR00580] transcription-repair coupling factor (mfd) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000538763 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.00597332 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
TTGGTTGTTG CCATTTTTGT TCGTATAATA ACGGCCTTCC TACTTAGTTT TAGCACACTG 
GCCTTTGATA AGGATACATA CTACACCGTT ATGCCTAAAT TTATTGAGCA CCCTTTAACC
GATATTTTTA CCCCCACCAA CGAGCAGTTA TTTCCTATCG ATAAGGCGCA AAAGCGCTGG
CTTTATCCGG CTTATGCAGC AGCAGGCAGC TTATGGCTGG CCAGTTTAAG TGATTGTCCT
GTGGCCAATG TCGCCAATAG ACTCAAGGTG GTCGTCACCA AAGATCAAAA CCAGCTCAAC
CAGATCGAGA CAGAATTGGC GTTTTGCGGT GTCGATGCTT ATGTGTTTCC TGATTGGGAA
ACACTAACCT ATGATGAGCT GTCACCGCAT CAAGATATTG TCAGTGAGCG TATCAATCTA
TTAACCGATA TGCCAAAGCA GGGCATTTTA CTGATTAGTA TTCAGACGCT GATGCAGCGT
ATGGCGCCGC CAAGCTGGCT GATTGGTCAG CATTTTGATT TAAGCGTTGG TGATATTTTT
GACATCAATC AACAACGAGA GATGCTCGCC GCAGCCGGCT ATCGGGCGGT GGATAATGTG
TTTGAACCCG GTGAATTTGC GGTGCGCGGT AGTGTGATCG ATATCTTCGC CATGGGTCAG
CCGTTTCCGC TACGCTTGGA TTTGTTTGAT AATGAAATTG AGACCATTCG ATTTTTTAAC
CCGCAGACTC AGCGCACACT GTCTACTCAG ACCTTGATGG ATCTGGTTGC AGGCCGTGCC
GATGCCAATA GTGCCAATCA GCATGATTTA ACGGTTGAAT CCTTATCTCT ACTGCATAAG
CTGCCTGATG TGTCTAAGCC AATCACTCAG TTTCAGATCT TGCCGGCCAA AGAGTTTCCG
CTAGATGAGG GCAAAGAGAC CTTCCGTAAT AACTTTGCAG CCATGTTCCC CAATGTCAGT
AGCCGCAGGT TTGAGCTACA CAAAGACGTA ATGGCAGGCA TTGCGAGTAG TGGTCTGGAG
TACTACCAGC CATTGTTTTT TGAAATAGAG GATTGGTCAC AAAATGGCCA TTTATTCTCC
TATTTTCCCA AAGATACCCT GTTTATTATC GATGAAAATA CGGCTGAGGC GCAGGCTGAC
TATTGGTCAC AGATTCAGCG CCGTTATGAA GAGCGCCGTC ATGATATCGA TAAGCCAATT
GTAGAGCCTA CATTGCTTTA TTTACCAAGC AATAGCTTAA ATGAGATGCT CAATGCGTAT
CCGCGCGTTA TCTTAAGCCA AAGTGACTTA GCAGCTGCCG ATAATACCCA AAGCGGTAAG
GTAAAACTGC CGGCACTGAT GCCGCCTGAG CTGCCGGTCA GTCATCAAAA AGCTGAGCCT
TTATTAGAGC TTTTAAATTA TGCCAGTGCC GGGTGGGATG ACAACACCAC TGAGGCGGCT
TTAGCGCGCC CAATCCTAGT GGTGGCCGAG ACTGCTGGCC GACGTGAGAT TTTACTTGAG
CTATTTCGCG GCAAGCTTAA TGTGCAGACC TTTGATAGCT TACAGCAGTT TTTAGGCAGT
GAGTTGTATC AACAATCATT GATTAAAAAC ACCGCATCCG CTAGCAACAC TAAGCCAACG
GTGGGTCTGA CCATTGCGCC CATTGAGCGC GGCGCAGTCA TCGATCAGCA TTTATCCATT
ATCAGTGAAA CTCAACTGTT TGGTCGTCAA GTGCTACAAA CCCGTCGTCG CCGCCAAAGC
GATGTGTCCG AAGAGTTCTT AGTAAAAAGT GTCACCGAAT TAACGGAAGG CAGTCCGGTG
GTGCACATTG ACCAAGGTAT TGGTCGTTAT CATGGTCTAA TCACTCTAGA CATCGGTGAA
GGTGAGCAAG AATTTATTCA TCTAAAATAT GCCGATGATG CCAGTATCTA TGTGCCCGTG
GCCAATCTAC AGCTGATTAG TCGTTATAGT GGCGGTGATC CAGCACTTGC GCCTTTGCAT
AAGATTGGTA GCGGTAAATG GGATAAGGCC AAACAAAAAG CACTGGAGCA AATCCACGAT
GTGGCGGCTG AGCTGCTTAA TATGCAGGCA CGCCGCCAGG CCAAAGAGGG TATCCACTTC
AAGGTGGAAA CGGCTCAGTA TGAGCTGTTC GCCAGCCAGT TTGCCTTTGA AGAGACCCCC
GATCAGGCCA ATGCCATCGA TGCGGTGATG CATGATATGA AGCAGAACAA GCCGATGGAT
CGCCTGATTT GCGGTGATGT GGGCTTTGGT AAAACAGAGG TGGCCATGCG CGCGGCCTTT
ATTGCGGTAA ATAGTGGCTA TCAAGTGGCG GTACTGGTGC CGACTACCTT GCTGGCAGGA
CAGCATGAAG ACAACTTTAA AGACCGCTTT GCTGATTGGC CCATTCGAGT GGAGACGCTT
TCTCGCTTTG GGGGCAAAAA ATACCAAGAT CAAGTGCTAG AGGATCTAGC AGCAGGCAAA
GTAGATATTG TTATTGGCAC CCATAAGCTG CTACAAAAAG ACGTGAAATT TGCCAATTTA
GGCTTAATGA TTGTCGATGA AGAGCACCGC TTTGGGGTAC GCCACAAGGA GCGAATTAAA
GCCATTCAAA GCGATGTTGA TAGCTTGTCT ATGACTGCCA CGCCTATTCC GCGTACGCTC
AATATGGCAT TGACCGGTAT GCGTGACATG TCAATTATTG CCACTCCGCC GGCGCGCCGC
TTGTCGATTA AAACCTTCGT GATGCAAAAG ACAAATCAGC TCATGAAAGA GGCTATTTTG
CGTGAACTGC TGCGTGGCGG ACAGGTGTAC CTGCTGCATA ATGATGTCGC TAGCATCGAG
CGTATGGCAG AAAATATCCG GGAGCTTGTG CCAGAGGCTC GAGTCGGTGT TGCGCATGGT
CAGATGAATG AGCGTGGTCT TGAGCAGGTG ATGCAGCAGT TTTATCACAA AAAATTCAAC
GTGCTGGTGT GTACCACCAT TATTGAGACT GGTATTGACG TGCCCAATGC CAATACCATT
ATCATCGAGC GCGCCGATAA ATTTGGTTTA GCGCAGCTGC ATCAGCTACG TGGCCGAGTA
GGGCGTAGTC ACCATCAGGC TTACTGTTAT CTTCTAGTGC CTTCGGTAAA AGGCCTAAAA
GGCGATGCCA AAAAACGCTT AACTGCCATT GAGCGTGCCA ATACCTTGGG CGCAGGCTTT
ATGCTGGCCA GTGAGGACTT GGAGATTCGC GGCGCTGGCG AGATACTGGG TAAACAGCAA
AGCGGTAACA TGCAGGCCAT TGGTTTTAGT CTGTACATGG ACATGCTAGA GCGGGCAACC
AAAGCCATTA AAGCGGGCAA AGAGCCGGAT TTAAACACGC CGCTGTCGTT GACCAGTGAT
ATTAATCTTC ACAGCTCCGC GCTGATACCT GAAGATTACG TCAATGATGT GCCGCAGCGT
TTGTTGTTTT ATAAACGTAT CAGTAATGCG GAAGACAAAG AGGTGCTTAC TGACATTCGT
ACCGAAATGA TTGATCGCTT TGGTGCGCTG CCTGATCAGA CCAAGCAGCT GTTTGCGATT
CATCAGCTGC GGGTATTGGC TGAGCCTTTG GCGATTTATA AGATTGATGC GACCAGCAAC
AGCGTTATCC TAGAGTTTGC CCCAGACACT CCGGTTGAAG CACTAGCGAT TATTCAGCTT
ATTCAGTCTG ATGGCAATCG CTACCGTATG AATGGTGCCT CAGGTATCCG CTATACCAAT
CCGGATAAGC TTGATACGCC AGCCAAGCGG GTAGAGGTAG TGCGTGAGCT GCTCAACCAC
TTTACTCGTC ATGTTAAGGA CAAAGCGGCT CAGTAG
 
Protein sequence
MVVAIFVRII TAFLLSFSTL AFDKDTYYTV MPKFIEHPLT DIFTPTNEQL FPIDKAQKRW 
LYPAYAAAGS LWLASLSDCP VANVANRLKV VVTKDQNQLN QIETELAFCG VDAYVFPDWE
TLTYDELSPH QDIVSERINL LTDMPKQGIL LISIQTLMQR MAPPSWLIGQ HFDLSVGDIF
DINQQREMLA AAGYRAVDNV FEPGEFAVRG SVIDIFAMGQ PFPLRLDLFD NEIETIRFFN
PQTQRTLSTQ TLMDLVAGRA DANSANQHDL TVESLSLLHK LPDVSKPITQ FQILPAKEFP
LDEGKETFRN NFAAMFPNVS SRRFELHKDV MAGIASSGLE YYQPLFFEIE DWSQNGHLFS
YFPKDTLFII DENTAEAQAD YWSQIQRRYE ERRHDIDKPI VEPTLLYLPS NSLNEMLNAY
PRVILSQSDL AAADNTQSGK VKLPALMPPE LPVSHQKAEP LLELLNYASA GWDDNTTEAA
LARPILVVAE TAGRREILLE LFRGKLNVQT FDSLQQFLGS ELYQQSLIKN TASASNTKPT
VGLTIAPIER GAVIDQHLSI ISETQLFGRQ VLQTRRRRQS DVSEEFLVKS VTELTEGSPV
VHIDQGIGRY HGLITLDIGE GEQEFIHLKY ADDASIYVPV ANLQLISRYS GGDPALAPLH
KIGSGKWDKA KQKALEQIHD VAAELLNMQA RRQAKEGIHF KVETAQYELF ASQFAFEETP
DQANAIDAVM HDMKQNKPMD RLICGDVGFG KTEVAMRAAF IAVNSGYQVA VLVPTTLLAG
QHEDNFKDRF ADWPIRVETL SRFGGKKYQD QVLEDLAAGK VDIVIGTHKL LQKDVKFANL
GLMIVDEEHR FGVRHKERIK AIQSDVDSLS MTATPIPRTL NMALTGMRDM SIIATPPARR
LSIKTFVMQK TNQLMKEAIL RELLRGGQVY LLHNDVASIE RMAENIRELV PEARVGVAHG
QMNERGLEQV MQQFYHKKFN VLVCTTIIET GIDVPNANTI IIERADKFGL AQLHQLRGRV
GRSHHQAYCY LLVPSVKGLK GDAKKRLTAI ERANTLGAGF MLASEDLEIR GAGEILGKQQ
SGNMQAIGFS LYMDMLERAT KAIKAGKEPD LNTPLSLTSD INLHSSALIP EDYVNDVPQR
LLFYKRISNA EDKEVLTDIR TEMIDRFGAL PDQTKQLFAI HQLRVLAEPL AIYKIDATSN
SVILEFAPDT PVEALAIIQL IQSDGNRYRM NGASGIRYTN PDKLDTPAKR VEVVRELLNH
FTRHVKDKAA Q