Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_1587 |
Symbol | rpsA |
ID | 5205592 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | - |
Start bp | 1953206 |
End bp | 1954885 |
Gene Length | 1680 bp |
Protein Length | 559 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640599809 |
Product | 30S ribosomal protein S1 |
Protein accession | YP_001280478 |
Protein GI | 148653385 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0539] Ribosomal protein S1 |
TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000113977 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.000457786 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGGAATCAT TTGCTGAACT ATTTGAAGCG AGTCTAGAAG AGCAAGGTCT TGATATTGAG CGTGGCTCAG TAATCAGCGG TGCTGTTGTA GCAATCGATA GCGATTGGAT TACAGTTGAC ACTGGTTTGA AGTCTGAGGG TGTTGTTGCT CGTGAAGAGT TCTTAGACGA CAATGGCGAG CTTGAAGTAG CAGTGGGCGA TAGCGTTGAT GTTGTTGTTG AAGCTGTTGA CAACGGTATG GGTCAAACCC TACTGTCACG TGAAAAAGCA AAACGTGTAG AAACTTGGAA CGCGCTTGAG AAACTATTTG AAGGCGATGA AATTGTAAAA GGTATCATCT CAAGCAAAGT TAAAGGCGGT TTTACTGTTG ATGTAGGTTC AGTACGCGCT TTCTTACCAG GTTCATTAGT TGACGTTCGT CCTATCCGTG ACACAACGCA CCTTGAAGGC AAAGAGCTAG AATTCAAAAT TATTAAACTA GATCAAAAAC GTAACAACGT TGTTGTTAGC CGTAAAGCGG TTATGGAAGC TGAAAACTCA GCTGAGCGTG AAGAGCTACT TAATAAGCTT GAAGAAGGTA TCGAAGTTGA AGGTATCGTT AAGAACCTAA CTGACTACGG TGCATTCGTA GACTTAGGTG GTATCGACGG TCTACTACAC ATCACTGATA TGGCATGGCG CCGCATCAAG CACCCATCAG AAGTGGTTGA AGTGGGTCAA GACCTTAAAG TTAAAGTACT TAAGTTTGAC CGTGAGCGCA ACCGCGTAAG CCTAGGTCTT AAGCAGCTAG GTACTGATCC TTGGGATAAC GTTGGCGGTA CTTACCCAGT AGGTAGCATC GTTAAAGCTC GCGTAACTAA CCTAACTGAT TATGGTTGTT TCGCTGAGAT CTCTGACGGT ATCGAAGGTC TGGTACACGT ATCAGAAATG GATCACACTA ACAAAAACAT CCACCCATCT AAAGTCGTTC AGATTGGTGA CGAAGTTGAC GTTATGATCC TAGATATCGA TGAAGAGCGT CGTCGTATCA GCCTAGGTAT CAAACAAACT CTACCAAACC CATGGGAAGA GTTTGATAAG AAATATGACC GTGGCGATAA GCTAACGGGT ACTATCAAGT CAATCACTGA CTTTGGTATC TTCATCGGTC TTGACGGTGG TATCGATGGT CTAGTTCACC TATCTGATAT CTCTTGGAAC GAAGCTGGCG AAGAAGCTAT CCGTAACTAC AACAAAGGCG ACACTGTTGA AGCTATGGTT CTATCAGTTG ACGCTGAAGC CAACCGCATC AGCCTAGGTA TCAAGCAGTT AAGCTCTGAT CCATTCAACG AGTACCTAGT AGGTAACGAC CGTGGTTCAA TCGTAACTGG TACCGTTAAA GACGTTGACG CTAAAGGCGC TACAATTACT TTAGCAGACG AAGTTGAAGG TTACTTACGC GCATCAGAAA TCCAGCGTGA CAAAGTTGAA GATGCAACTA AGCATCTAAA CGTAGGCGAT AGCGTTGAAG CGAAAATCAT CAGCGTTGAT CGTAAATCAC GTGGCATCAG CTTATCAATC AAAGCGAAAG ATGAAGCTGA AGAGCGTCAA GCGATTAAAG AGCTTGGTAG CACTCAAGCT GCTCCTGAAG CACAGCCAAA AACAATTGGT GACTTGATCA AAGAGCAAAT GCAAGACTAA
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Protein sequence | MESFAELFEA SLEEQGLDIE RGSVISGAVV AIDSDWITVD TGLKSEGVVA REEFLDDNGE LEVAVGDSVD VVVEAVDNGM GQTLLSREKA KRVETWNALE KLFEGDEIVK GIISSKVKGG FTVDVGSVRA FLPGSLVDVR PIRDTTHLEG KELEFKIIKL DQKRNNVVVS RKAVMEAENS AEREELLNKL EEGIEVEGIV KNLTDYGAFV DLGGIDGLLH ITDMAWRRIK HPSEVVEVGQ DLKVKVLKFD RERNRVSLGL KQLGTDPWDN VGGTYPVGSI VKARVTNLTD YGCFAEISDG IEGLVHVSEM DHTNKNIHPS KVVQIGDEVD VMILDIDEER RRISLGIKQT LPNPWEEFDK KYDRGDKLTG TIKSITDFGI FIGLDGGIDG LVHLSDISWN EAGEEAIRNY NKGDTVEAMV LSVDAEANRI SLGIKQLSSD PFNEYLVGND RGSIVTGTVK DVDAKGATIT LADEVEGYLR ASEIQRDKVE DATKHLNVGD SVEAKIISVD RKSRGISLSI KAKDEAEERQ AIKELGSTQA APEAQPKTIG DLIKEQMQD
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