| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1583 |
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| Symbol | |
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| ID | 5205040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | - |
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| Start bp | 1947065 |
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| End bp | 1950304 |
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| Gene Length | 3240 bp |
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| Protein Length | 1079 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640599805 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_001280474 |
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| Protein GI | 148653381 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1388] FOG: LysM repeat |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.000168341 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0166212 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTTA GAAAAACCTC CATTCGATTT TGTAAGCTGC CGTTAGTAGT GGCGATAGGC
TCTGTTATTT TGGCAGGGTG TAATAACACA GCGCCTCTAC AAAGTGGTAC GGCACAGGGA
ACTCGTATCC CTGTGGCACA AAACGAAGCG GTGTCTAATG TGCCAGCTAC CGATGGCTAC
AGCACAGCAC TATTGGACGA TGACAGCTTA GATGAGCTTG AAAACCTATT AGAAGCCACC
GATATGAAAA TGGTGGAAGA TGACAAGTTG GCCATTCAGC AGTATGGTAA CTTGTGGGAC
CGTATGCGTG CCGGTTTCCG TATCGATCAA AGCCAATATG GCTATGGCCA ACAGCAGCGT
ATTGATGCAC AAAAGAACTG GTTTATTACC CGTCAAGACT ATATCAACCG TTTAACCGCC
CGTGCCAGTC GCTACTTATA CCACACGGTA CGTGAAGCTG AGCGCCGCAA TATCCCAACT
GAGCTGGCGC TACTTCCGGT CATTGAGAGC TCCTACGATC CAACCGGTAC TTCTAACGCG
GCGGCTGCAG GCTTGTGGCA GTTTATCCCA AGCACAGGCC GTATCTATGG CCTAACCCAG
ACGCCTACTT ATGACGGCCG ACGTGACGTT ATTGAATCCA CCCGAGCTGC GTATGACTTC
TTGACCTCGC TGCATAACCA ATTTGGCAGC TGGGAGCTGG CCTTAGCCTC TTATAATGCG
GGCCCAGGCC GGGTTCAAAA GGCGATTGAT GCCAACCGTG CCCGCGGTCT GCCCACTGAC
TTTTGGTCGT TGTCACTACC GACTGAGACC ATGCACTATG TCCCTCGTTT TATGGCCGTG
GCTCAGATCG TGAAAGACAC GGGTCAATAT AGTATTTATT TGCCTGCCAT TGCCAACCGT
CAGCATTTTA GAAGTGTGCC GGTCAACTAT GGGGTCAGTC TAAATGAAAT CTCACAAATC
ACAGGGGTGA GCTATGATGA GTTAAAAGCT CTTAACCCTT CATTGACCAG CGGCCGTGTA
GATACCTCAG GTCCAAACCG AGTGATCATT CCAAACCAAG TGAATATCTT GGTTGACTCA
AAAATCAGTA ATCTCAATGG GAATGGTGGC ACTATTTTAG CCAGTAACAG CGGCAGTAGC
AGCTCCCCTT ATAGTATTCC AGATTCACAA TATCAGGTAT TGGCCAAATC GCCTGAAGGC
TTGGCTGAGT TCGCCAATAA AGCACGTGCG CCCACCCAAA ACAGCAGCTA TATTGCGCCA
AACCCTACCG TTTCATCAAG CTCAACCTTT AAAGAGCCGC CCATTAGTGA AAGTGAGAAA
AAGCGCATTG AGTCAGAGTT TGCTCGTTCA AATACACTGC CCACGACTTC TGCTCAGTTA
ACCCGTAACG ATACCATCGT TCAAGAGCCG CCTTTATCTG CTGAAGAGAA GAAGTTTATC
TCGCAGCAAA TTCGCCAGCA GTCACCTGAT GTGGGTGAGG TGGTAAGCTC AGTGGATGGT
AATATTAAGC TTGAAGCCAT TCAGACTCAG CAGTCTATTT TAGAGGCACG CGGTGAAGAG
AAGAAAATTA GCTTTGATCG TCCAACTGCC TCGCAGCAGC AAGTAACACC ACCAAAGCCA
ACCGGAACTC GAACCGTTTA TACCGTAAAA CGTGGTGATA CCTTGGTAAA TATCGCCTCA
CGTGCGGGTC TAAATTGGCG TGATATTGCT GATTGGAACC AAATTAACCC CAACTCTACA
TTACTTGCGG GCACCAATTT ATATTTATAC AATGCCAAGC CGATTGCGCC TTTAGATTCT
GCCTCTGCCA AGCCGGATAC CACGCAAAGT GGCGCGCAGC CTAACACTTA TATTGTGCGC
CCAGGCGACA CTTTAATTGG TACGGCCAAC CGTGTGGGCT TAAACGTATC CCGTCTGGCA
AGTTATAATG GTCTATCGAC CAATGCTCAG CTACGCGCAG GTCAGAAGCT CTGGCTAATC
CCTGGCATGG TCAAAACCAC TGACACCAGC CCTGCTGCCT CAAGCAGCTC AGATGCCGTT
TATAAAGGCA AAACAGAGAC GTATACGGTG AAGCGTGGTG AGGGCTTAAT TGGTCTTGCT
TCTCGCTTTA ATATTCCAGT CACAACCTTA GCGGCAATGA ATGACTTAAG TCCAACAGAG
CAGTTGCTAG TCGGTCAGCG TCTGACAGTT CCTACAGGCA CAGCGAGCAG TAGCAGCTCA
AGCTCATCGA GCAAGCCGGC CACCTCTAGC TCAAGCAGTA GCTATACGGG TGAGACTACC
CGCTACACCG TACAATCTGG TGATAGCTTA ATTGGTATCG CGAATAAGCT TGGTGTGGCC
CATACTCAAA TTGCGGATAT AAATAACTTC TCAGCGACCA CTCAGCTACA GCGTGGTCAA
GTGATTAAGC TGCCTGTGAC CAAAGAACAA GTCGCGCGTG GCTTAAATAA TCAAAGTATC
AAATACAAAG TACAGTCTGG TGATTCGCTC ACAGCACTGG CCAATAAATA CAATATGTCT
ATCGCTGATT TGGCCAAAGC CAATAACTTG GGGGTAACCT CAAACCTATT TGTCGGTCAA
GTTATTACCA TCCCAGGCAG TGGAGCAGGC TCATCGTCAT CAAGTAGTGC AAGCTCATCG
GCAAGTAGTT CAAGCAGCAG TTCGAGCTCA AGCAGTAGTT CGAGCTCGGG ATCAAAGCCT
AACTATACCG GTACCTATAA GGTGCAGGCT GGTGATGGCT TAATCAACTT AGCGCGTGAC
TACGGGGTAT CGACTGCAGA TCTAGCTGCG GCTAATAATA TCAGCGCCAC CGCAGGTTTA
TTTGTAGGCC AAACGCTCAA AGTACCTAAT ACCAAGGCCA ACAACTCAAG CGCTGCGTCA
AGCTCAAGCC GTGCTTCAAG CGCCAGCAGC TCGGCGACTT CGGCAGCTGC AGTCTCTAGT
AAAGGTGGCA ATTATACGGT TAAATCAGGT GATTCTTTAA TTGGCTTGGC CAACCAAAAT
GGCTTGAGTG TGAGTCAATT GGCCAGCGCC AATGGCTTAA GTTCAACTGC ACAGTTACGT
ATCGGTCAAA AAATCACCAT TCCGGCGACC ACCACCACGT ATAAAGTGAA GTCAGGAGAT
AGCTTGATTG GTCTGGCCAA AAAATATGGC ATGACCCCAG AAAAATTCGC TGAGCTAAAC
GGTATCAGTA GCACAGCTAT GCTACAGCTG GGCCAGACTC TAAAAGTACC TGTTCAATAA
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| Protein sequence | MNFRKTSIRF CKLPLVVAIG SVILAGCNNT APLQSGTAQG TRIPVAQNEA VSNVPATDGY
STALLDDDSL DELENLLEAT DMKMVEDDKL AIQQYGNLWD RMRAGFRIDQ SQYGYGQQQR
IDAQKNWFIT RQDYINRLTA RASRYLYHTV REAERRNIPT ELALLPVIES SYDPTGTSNA
AAAGLWQFIP STGRIYGLTQ TPTYDGRRDV IESTRAAYDF LTSLHNQFGS WELALASYNA
GPGRVQKAID ANRARGLPTD FWSLSLPTET MHYVPRFMAV AQIVKDTGQY SIYLPAIANR
QHFRSVPVNY GVSLNEISQI TGVSYDELKA LNPSLTSGRV DTSGPNRVII PNQVNILVDS
KISNLNGNGG TILASNSGSS SSPYSIPDSQ YQVLAKSPEG LAEFANKARA PTQNSSYIAP
NPTVSSSSTF KEPPISESEK KRIESEFARS NTLPTTSAQL TRNDTIVQEP PLSAEEKKFI
SQQIRQQSPD VGEVVSSVDG NIKLEAIQTQ QSILEARGEE KKISFDRPTA SQQQVTPPKP
TGTRTVYTVK RGDTLVNIAS RAGLNWRDIA DWNQINPNST LLAGTNLYLY NAKPIAPLDS
ASAKPDTTQS GAQPNTYIVR PGDTLIGTAN RVGLNVSRLA SYNGLSTNAQ LRAGQKLWLI
PGMVKTTDTS PAASSSSDAV YKGKTETYTV KRGEGLIGLA SRFNIPVTTL AAMNDLSPTE
QLLVGQRLTV PTGTASSSSS SSSSKPATSS SSSSYTGETT RYTVQSGDSL IGIANKLGVA
HTQIADINNF SATTQLQRGQ VIKLPVTKEQ VARGLNNQSI KYKVQSGDSL TALANKYNMS
IADLAKANNL GVTSNLFVGQ VITIPGSGAG SSSSSSASSS ASSSSSSSSS SSSSSSGSKP
NYTGTYKVQA GDGLINLARD YGVSTADLAA ANNISATAGL FVGQTLKVPN TKANNSSAAS
SSSRASSASS SATSAAAVSS KGGNYTVKSG DSLIGLANQN GLSVSQLASA NGLSSTAQLR
IGQKITIPAT TTTYKVKSGD SLIGLAKKYG MTPEKFAELN GISSTAMLQL GQTLKVPVQ
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