| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1575 |
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| Symbol | |
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| ID | 5204878 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | + |
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| Start bp | 1935099 |
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| End bp | 1936970 |
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| Gene Length | 1872 bp |
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| Protein Length | 623 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640599797 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_001280466 |
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| Protein GI | 148653373 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.0235989 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0103568 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATA AGGCAGCCTC TCAATCTACC TCTCAACTAG CCACACTTAT CCAGATGGGT
AAAGAGCAAG GCTATTTGAC TTATGCTGAG GTTAACGACC AACTTCCCGC CTCAATCACC
GAAAGCGACC AAATTGAAGA CATCGTTCAA ATGCTTACGG ATGTTGGTAT TAAAATCTTT
GAATCAGCGC CAGATGCTGA TGATATCTTG ATGAACGATG GTGCTAACGA TGACGACATG
GCCACAGATG AAGCTGCTGC TGTATTGGCT GCGGTAGAAA CTGAGCCTGG TCGCACCACC
GACCCTGTGC GTATGTATAT GCGTGAAATG GGTACGGTTG ACTTATTGAC GCGTGAAGGT
GAAATCGTTA TCGCCAAGCG TATCGAAGAG GGTATCCGTG ATGTCCAGCA TGCCATGGCT
TACTGGCCAG GTACTGTGCA GTTTATCCTA GATGAATATG ACTTAGTAGA AGCGGGCGAG
AAAAAACTCT CTGACGTCAT CACTGGTTTT TTAGATCCTG AAGAGATTGA ACCGGCAGTT
GTGGAAGAAG ACGAAGAAAA AATCCCCGTT ATCACCACCA AATCTAAAGC TAAAGATGTC
GATGACGAAG ATGATGAAGA AGAAGCTGAG GAAGAGGAAG AAGCTGAAGA AAGCGGTGGC
CTAGATCCTG AGCTGGTTCG TCAACGTGTC GAGGAGATCC GTGAATTATT TGCGGTGGCA
AAACAAGCCC TAGAGCAGTA TGGTCGTGGC AGTGCGCAAG CTGAAGAAGC CTATGCTCAG
CTGGCCGAAC GCTTTATGCT ATTAAAGCTT AACAACCGCA TGGCGGATAA TGTTATGGCT
ATTATGCATG ATGTTTATGA CGATGTGCGT AAGCAAGAGC GTCAAATCAT GCGCTTGGTC
ATTCGCCGCG GTAAAATGCC TCGTAGCGAG TTCCGTAAGA CTTTCCCAAG TAACGAGACC
AACGTAGATT GGCTAACTGA TCGCCTAAAA GGCAACCCTA AATTTGCAGA TAGCTTAGCC
AAAGTGGTCG ACGATGTGGT GGTTTTACAG CGCCGTATCC GCGACCATGA AGACAAGCTG
GACATGCAAA TTACCGAAAT GAAAGAAGTG GCGCGCCGTA TGGCCATCGG TGAGGCAAAA
GCCCGCCGTG CCAAAAAAGA GATGGTCGAA GCCAACTTAC GTTTGGTAAT CTCTATTGCT
AAGAAATATA CCAACCGTGG CCTACAGTTC TTAGACTTGA TTCAAGAAGG TAATATTGGC
TTGATGAAAG CGGTAGATAA ATTTGAATAT CGCCGTGGTT ATAAGTTCTC AACTTATGCC
ACTTGGTGGA TTCGTCAGGC CATTACCCGC TCTATTGCTG ACCAAGCCCG CACCATTCGT
ATTCCAGTGC ATATGATTGA GACCATCAAC AAAATCAACC GTGTGTCTCG TCAATTGTTG
CAAGAGATGG GTCGTGAGCC CACACCTGAG GAATTAGGCG AACGTTTAGA AATGGATGAG
GTTAAGGTTC GTAAAGTATT AAAAATTGCC AAAGAGCCTA TCTCTATGGA GACCCCCATC
GGTGATGATG AAGATTCACA CCTAGGTGAT TTCATTGAGG ACCAGACCAT CTCAAGCCCT
GTAGAAGATG CCACCTCAGC AGGTCTACAA GAAGCGACTC GAGATGTGCT GAGCAACTTA
ACAGAACGTG AAGCCAAGGT GCTACGCATG CGTTTTGGTA TTGATATGCC AACCGATCAC
ACCCTAGAAG AGGTTGGTAA GCAGTTCGAT GTGACGCGTG AGCGTATTCG TCAGATTGAA
GCCAAAGCGT TACGTAAACT GCGTCACCCT TCTCGCTCTG AGCATTTACG TTCGTTCTTA
GAAAACGACT AA
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| Protein sequence | MTDKAASQST SQLATLIQMG KEQGYLTYAE VNDQLPASIT ESDQIEDIVQ MLTDVGIKIF
ESAPDADDIL MNDGANDDDM ATDEAAAVLA AVETEPGRTT DPVRMYMREM GTVDLLTREG
EIVIAKRIEE GIRDVQHAMA YWPGTVQFIL DEYDLVEAGE KKLSDVITGF LDPEEIEPAV
VEEDEEKIPV ITTKSKAKDV DDEDDEEEAE EEEEAEESGG LDPELVRQRV EEIRELFAVA
KQALEQYGRG SAQAEEAYAQ LAERFMLLKL NNRMADNVMA IMHDVYDDVR KQERQIMRLV
IRRGKMPRSE FRKTFPSNET NVDWLTDRLK GNPKFADSLA KVVDDVVVLQ RRIRDHEDKL
DMQITEMKEV ARRMAIGEAK ARRAKKEMVE ANLRLVISIA KKYTNRGLQF LDLIQEGNIG
LMKAVDKFEY RRGYKFSTYA TWWIRQAITR SIADQARTIR IPVHMIETIN KINRVSRQLL
QEMGREPTPE ELGERLEMDE VKVRKVLKIA KEPISMETPI GDDEDSHLGD FIEDQTISSP
VEDATSAGLQ EATRDVLSNL TEREAKVLRM RFGIDMPTDH TLEEVGKQFD VTRERIRQIE
AKALRKLRHP SRSEHLRSFL END
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