Gene PsycPRwf_1564 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsycPRwf_1564 
Symbol 
ID5206769 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter sp. PRwf-1 
KingdomBacteria 
Replicon accessionNC_009524 
Strand
Start bp1917978 
End bp1921193 
Gene Length3216 bp 
Protein Length1071 aa 
Translation table11 
GC content50% 
IMG OID640599786 
Productbifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_001280455 
Protein GI148653362 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.000721596 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAATTTCC CCAATCCGTT TTATCCGCAA AACCCCATCT CTTTTTCGCC AGAACAGGTG 
CTGGACCCCG CTTTTATTAA TAGGCCACCA AGCGAGCTAT TTAAGCTAAT CTCGCCCTTA
TATAGTGCCG ATGAGGACCA ATGGCTTGGG GCTTTATTAC CCCTAGCTGA GCCTAGGCTT
AAAGAAGGCG TTGACGAGCG TTTGGCCATT AGCGATCAGA CCAAAAGCTT AGTGGAGCAT
GTGCGTAGCA ATGACAAAGC GGTCAAAATG GTGGACTCGC TGTTATTAGA GTACAGCTTA
GATACCCAAG AGGGTATTTT GCTCATGAGC TTGGCCGAAG CTTTGATTCG AGTGCCAGAC
AATGCCACAG CCGATGCGCT TATCCGTGAC AAAATGAGCG TTGCCGATTG GAAAAAACAC
TTAAAAGATG ACAATGGCTT TATCGTTAAT GCCTCAACTT GGGGGCTGAT GATGACTGGC
CGTGTGGTCA GCGTGGATTC TTCAACCACG GCAGCAGGCT TCTTAGATCG TATGACCAAG
AAGATGGGTG AGCCTGTGAT TCGTAGCGCC ATGCAGCGTG CGATGAAGAT TATGGGCCAT
CAGTTTGTGC TGGGTGAGAC CATTGAGGAT GCCAATCGCA ACAGTCAGCC TTATCGTAAT
AAAGGATATA CTTACTCCTT TGATATGCTT GGTGAGGCGG CGGTTACTCA TAAAGATGCC
GAAAAGTACT TCAGTGATTA TCTGCATGCC ATTCGCTCAG CGGCGCATGT TCAAGTCAAA
GAGGGTATGC CTAAGCCTTC GGTTTCTATT AAGTTATCTG CGCTGCATCC ACGTTATGAA
GCGACCCAAA TTGATCAGGT GCTAGGCTTG CTGCGTCAGC GTTGTATCTT ACTGATTGAA
GCGGCGCGTG AGGTGGATGT CGATATCAGT ATTGATGCAG AAGAGGCCGA CCGCTTAGAG
GTGTCGTTAA AATTATTTGA GTCTTTATAC CGAGACAACA TGACTCAAGA CTGGGATGGT
TTGGGGCTGG TGGTACAAGG CTACTCGAAA CGTGCTTTGG CGGTGCTGGC GTGGCTGGCA
AGCTTATCAA AAGAGGTGGG CGACCGTATC CCTGTACGCT TGGTAAAAGG CGCATATTGG
GATTATGAAA TTAAACTGGC TCAGCAAAAA GGCATTACCG GCTATCCGGT CTGGACCCGC
AAAGAGGGTA CCGACGTGGC ATATCTGGCG TGTGCCCGCT TCTTATTAAC AGAGCAAATT
CGTGGTGTGT TGTGGCCACA GTTCGCCACA CATAATGCCC ACACTTTATC GTCTGTGATG
ACCATGAGTG ATCATAGAGA CTTTGAGTTT CAGCGTCTAC ACGGTATGGG CGATGCGCTG
TATGATCATA TTTTGCAAGC GTACAATATT CCGGTCCGTA TCTATGCGCC TGTGGGTGCC
CACAAAGATT TGCTGCCGTA TTTGGTGCGC CGCTTATTAG AAAACGGTGC CAACAGCTCA
TTTGTGCATC AGCTACTCGA TAAGAGTCAT CCTGTTGAGA AGCTGACCGT ACATCCTTAC
GATAAATTGA CGGCACATGA AACCCTGCAT AACCCTCGTA TTCCGATGCC GCTTGATATC
TATGGTGGCC GCTTGGCAAG CTTTGGGCCT AATATCTTCG TTGAATCGCA GTGGCAACCC
TTTAAAGCGG CCGTTGATGC GCACCTAGCG CAGACTTGGC AGGCCAATCC GATTATCAGT
GGTCAACAAA TCACTCAAGA CAGCCATCAA CATTTAACGC TTAATAACGT GGTGGCGCCT
TGGAACCATC AAGTGGCTGT TGGTGAGGTG GTGTTTGCTG ATGCTGAGTT GGCTGCACAG
GCGATTGAAG CGGCGCATCA AGGCCAAGAT AGGTGGCAGC AAGTCTCTGC CAGCGAGCGT
GCGGCCATAT TGAAGCGTAC CGCTGACTTG TATGAAGACA ACTATGCTCA GCTTGTGGCC
ATGTGTCACA AAGAGGCTGG CAAGACCTTA CAAGACAGCA TTGATGAGGT GCGAGAGGCG
GTTGATTTTT GTCGTTATTA TGCCGAAGAA GCTGAGCGTT TAGAGCAACA GACTCACAGC
TTTACTGATA TCAATGGTAA GCAAGTCACC CAAAAAAGAG CGCCTCGCGG CACCATGGTA
TGTATCAGTC CTTGGAACTT CCCACTGGCC ATTTATACCG GTCAGATCAT GGGCGCCTTG
GCAGCTGGCA ACACTGTGGT GGCCAAACCA GCTGAGCAAA CCAGCTTAAT TGCTTACTTT
GCGGCGCAAT TGATGTATCA AGCCGGCGTA CCTGAGTATG CGCTACAATT GGTGACCGGT
GCCGGTGAAG TGGGCGGTGC CTTGACCTCA TCAGCGCACA TTGATGGGGT GGTATTTACC
GGATCAACTC AGACCGCACA GCTGATTAAC CGTGCGCTAC ACTCTGAGGA GCGCTTGCAG
CAAGTGGCTG AGCTGTTTGG TGATAAAAAA CCACTGCCTA TTTTGATTGC AGAAACTGGT
GGTCAAAATG CCATGATTGT CGACTCGACA GCCTTGCCTG AACAGGTGGT AAAAGATGCA
GTAATGTCAG CCTTTGGTTC TGCCGGCCAG CGCTGCTCGG CATGCCGTAT CTTGTGCTTG
CAAGAAGATG TGGCCGATAG TGTCATTGAG CTGCTAAAAG GCAATATGGC TCAGCTTATC
GTGGGTAACC CAACCCAAGT ATCGACTGAT GTGGGCCCAG TTATCGACCA AGACGCTCAA
AAAGGTCTGC GTGCCCATAT AGAGCAAATG CGTAAAGATG ACCGAGCACG CATTATTGCC
CAGACACCGA TCAGTGCAGA CGCCGCTCAT AACCTCAGTA ACAGCACCTT TGTATTGCCG
ACAGCCGTTG AAGTGGCCAG CATTGATGTG ATTGGTGGTG AGCACTTCGG TCCTATTTTG
CATGTGCTAC GTTACAAAGC GGGCAAGTTA GATGAGCTGA TTGATGAAAT TAATGCCACC
GGTTATGGCT TAACCTTGGG TATTCACAGC CGTATTGAAA CTGTGGCCAA TCACATTGAG
CGCCGTACCA AAGTGGGTAA CACCTACATT AACCGCAACC AGATTGGTGC GGTGGTAGAT
GAGCAGCCGT TTGGTGGTAG TGGCTTGTCG GGTACCGGTC CCAAAGCCGG TGGCCCTCGC
TATGTGGCCA GATTGACCCA GTGGCAGACG CTATAA
 
Protein sequence
MNFPNPFYPQ NPISFSPEQV LDPAFINRPP SELFKLISPL YSADEDQWLG ALLPLAEPRL 
KEGVDERLAI SDQTKSLVEH VRSNDKAVKM VDSLLLEYSL DTQEGILLMS LAEALIRVPD
NATADALIRD KMSVADWKKH LKDDNGFIVN ASTWGLMMTG RVVSVDSSTT AAGFLDRMTK
KMGEPVIRSA MQRAMKIMGH QFVLGETIED ANRNSQPYRN KGYTYSFDML GEAAVTHKDA
EKYFSDYLHA IRSAAHVQVK EGMPKPSVSI KLSALHPRYE ATQIDQVLGL LRQRCILLIE
AAREVDVDIS IDAEEADRLE VSLKLFESLY RDNMTQDWDG LGLVVQGYSK RALAVLAWLA
SLSKEVGDRI PVRLVKGAYW DYEIKLAQQK GITGYPVWTR KEGTDVAYLA CARFLLTEQI
RGVLWPQFAT HNAHTLSSVM TMSDHRDFEF QRLHGMGDAL YDHILQAYNI PVRIYAPVGA
HKDLLPYLVR RLLENGANSS FVHQLLDKSH PVEKLTVHPY DKLTAHETLH NPRIPMPLDI
YGGRLASFGP NIFVESQWQP FKAAVDAHLA QTWQANPIIS GQQITQDSHQ HLTLNNVVAP
WNHQVAVGEV VFADAELAAQ AIEAAHQGQD RWQQVSASER AAILKRTADL YEDNYAQLVA
MCHKEAGKTL QDSIDEVREA VDFCRYYAEE AERLEQQTHS FTDINGKQVT QKRAPRGTMV
CISPWNFPLA IYTGQIMGAL AAGNTVVAKP AEQTSLIAYF AAQLMYQAGV PEYALQLVTG
AGEVGGALTS SAHIDGVVFT GSTQTAQLIN RALHSEERLQ QVAELFGDKK PLPILIAETG
GQNAMIVDST ALPEQVVKDA VMSAFGSAGQ RCSACRILCL QEDVADSVIE LLKGNMAQLI
VGNPTQVSTD VGPVIDQDAQ KGLRAHIEQM RKDDRARIIA QTPISADAAH NLSNSTFVLP
TAVEVASIDV IGGEHFGPIL HVLRYKAGKL DELIDEINAT GYGLTLGIHS RIETVANHIE
RRTKVGNTYI NRNQIGAVVD EQPFGGSGLS GTGPKAGGPR YVARLTQWQT L