Gene PsycPRwf_1553 details

Gene Information

• Locus tag: PsycPRwf_1553
• ID: 5205382
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Psychrobacter sp. PRwf-1
• Kingdom: Bacteria
• Replicon accession: NC_009524
• Strand: +
• Start bp: 1904985
• End bp: 1905362
• Gene Length: 378 bp
• Protein Length: 125 aa
• Translation table: 11
• GC content: 44%
• IMG OID: 640599771
• Product: nitrite reductase (NAD(P)H), small subunit
• Protein accession: YP_001280444
• Protein GI: 148653351
• COG category: [P] Inorganic ion transport and metabolism; [R] General function prediction only
• COG ID: [COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases
• TIGRFAM ID: [TIGR02378] nitrite reductase [NAD(P)H], small subunit

Plasmid Coverage information

• Num covering plasmid clones: 31
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 8
• Fosmid unclonability p-value: 0.0010683
• Fosmid Hitchhiker: Yes
• Fosmid clonability: hitchhiker

Sequence

Gene sequence

ATGACCATTC AACTTATCTG TACTTTGAAC GATATTATCC CTGAAGGCGG CGTTTGTGCG 
CTCATAGAGG GCAAACAAGT GGCTATTTTT CGCACCAAGG ACAATCAATT ATTTGCCATT 
GACAATCTTG ACCCTTTTAG TAATGCCAAT GTCCTCTCTC GTGGTCTGAT TGGAGGTACT 
GTTGTCAAGA CTGAGCTTGA AGATGGTAGC GTGTCAGAAG ACGAGGTCAT CTATATCGCC 
TCACCCATCT ATAAGCAACG ATTTGATTTG GCCACGGGAC AATGCTTAGA TGATGAAACC 
GTAAAATTAG ACTCATACCA AGTCAGCCTT GATGGCGATC AGGTTATGGT CAGTCTAAAA 
AATGCCATGG CGGCCTAA 

 

Protein sequence

MTIQLICTLN DIIPEGGVCA LIEGKQVAIF RTKDNQLFAI DNLDPFSNAN VLSRGLIGGT 
VVKTELEDGS VSEDEVIYIA SPIYKQRFDL ATGQCLDDET VKLDSYQVSL DGDQVMVSLK 
NAMAA