| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1457 |
|---|
| Symbol | prfA |
|---|
| ID | 5206735 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 1786896 |
|---|
| End bp | 1787990 |
|---|
| Gene Length | 1095 bp |
|---|
| Protein Length | 364 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640599675 |
|---|
| Product | peptide chain release factor 1 |
|---|
| Protein accession | YP_001280352 |
|---|
| Protein GI | 148653259 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0216] Protein chain release factor A |
|---|
| TIGRFAM ID | [TIGR00019] peptide chain release factor 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.0262209 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.168501 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGACT CGTTAAGAGA ACGCTTAGAT CAAATGGTAG ACCGCTTTGA AGAAGTGACT
GCCTTGTTGT CTGATCCTGA TACCATCAGC GATAATAATA AATTTCGCGA GTTATCTATG
GAGCACAGCG AGCTGTCAGA GATTACCGCT TTGTGGCAGC GCTATCGTCA GGCTGAAATT
GATAAAAAAG ATGCACAAGA GATGATCAAC GATGCATCAG ATCCTGATAT GAAAGAGATG
ATGCAAGAGG AGATTGACTC AGCCAGCCGT GATATTGAGG CGATGGAAGA AGAGCTGAAC
GTCATGATGC TGCCAAAAGA TCCTAATGAT AAAGTACCTG CCTTCTTAGA AATCCGTGCC
GGTACCGGCG GTGATGAAGC GGCTATTTTC TCAGGCGATC TGTTTCGTAT GTATGAGCGC
TATGCCTCTT CACAAGGCTG GACTATCGAA GTGCTGTCAG CCAACGAAGG CGAGCACGGC
GGATATAAAG AGATTATCAG CCGAGTATCA GGTAATGATG TGTATGGCCG CTTAAAGTTT
GAATCAGGCG CACACCGAGT ACAACGTGTT CCTGAAACAG AAAGCCAAGG CCGTGTTCAC
ACATCAGCGT GTACGGTTGC GGTGATGCCC GAGGTGGAGA TTGATGATAC GGTAGAGCTA
AACCCAGCCG ATATTCGTAT GGATACCTTC CGCTCAAGCG GTGCCGGTGG TCAGCATGTA
AACACCACCG ACTCGGCGGT ACGTTTGACT CACATTCCAA CGGGTGTGGT CGCTGAGTGT
CAACAAGAGC GCAGTCAACA TAAAAACCGT GCCAAAGCCA TGCAAATGCT AATCGCCCGT
ATTCAGCAAG CCAAAGTGCA AGAGCAGGTC GATACTGCAG ATGCCCTACG CCGCAACTTA
GTGGGTAGTG GCGATCGCAG TGAGCGCATT CGTACTTACA ACTTCCCACA AGGTCGTATG
ACCGACCATC GTATCAACTT AACCCTATAT AAGTTAGATG CTATTATGGA AGGCGATTTA
ACAGAGCTAC TTGATGCGTT AAATCGTGAA CACCAGGCCG ATCTAATGGC CAGTATCGGG
GGTGGAGACG ATTAA
|
|---|
| Protein sequence | MKDSLRERLD QMVDRFEEVT ALLSDPDTIS DNNKFRELSM EHSELSEITA LWQRYRQAEI
DKKDAQEMIN DASDPDMKEM MQEEIDSASR DIEAMEEELN VMMLPKDPND KVPAFLEIRA
GTGGDEAAIF SGDLFRMYER YASSQGWTIE VLSANEGEHG GYKEIISRVS GNDVYGRLKF
ESGAHRVQRV PETESQGRVH TSACTVAVMP EVEIDDTVEL NPADIRMDTF RSSGAGGQHV
NTTDSAVRLT HIPTGVVAEC QQERSQHKNR AKAMQMLIAR IQQAKVQEQV DTADALRRNL
VGSGDRSERI RTYNFPQGRM TDHRINLTLY KLDAIMEGDL TELLDALNRE HQADLMASIG
GGDD
|
|---|
| |