| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1248 |
|---|
| Symbol | |
|---|
| ID | 5205613 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 1535255 |
|---|
| End bp | 1537567 |
|---|
| Gene Length | 2313 bp |
|---|
| Protein Length | 770 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640599467 |
|---|
| Product | bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase |
|---|
| Protein accession | YP_001280145 |
|---|
| Protein GI | 148653052 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0128] 5-enolpyruvylshikimate-3-phosphate synthase
[COG0287] Prephenate dehydrogenase |
|---|
| TIGRFAM ID | [TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.757925 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0192474 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTTTG AACAGGTTTG TATTGTTGGT CTGGGCCTTA TTGGCGCAAG CCTTGCTCAA
GCAATTAGGG ACAGACAGCT GGCTGCAAAG CTTGTGGCCG TAGACAGACA TGCTCCTAGT
ATTAAGTCAG CGATAGAGGC AGGCGTTATT GATAAGGGGA GCGACTCACT GTTTGAGGTG
GTCGCAGGCA GTGATTGTAT TATCCTGGCG GTACCGGTCA AGGCAGTGGG TGCTGTATTT
GCTGATATTA ACAGCGCTAT GCAGCAAGGT CTGATTACGA CAGCGTGTTT AATTAGCGAT
GTCAGTAGTA CCAAACAGAA CGTGGTAGAT GCTGCACAAA AGGCTTTTGG TCAGCTGCCC
ACAGGGTTTG TGCCTGCACA CCCGATAGCC GGTGCCGAGC AGTCTGGGTT TCATGCCCGC
CGCAGCGATT TGTTTGTCAA TCACAGCCTG ATTGTTTGTG AATTAAAAAG CACCACACCT
AAGGCCATTG CTCAAATCAG CCAGTTGTGG CAGAGTGTGG GCGCGACAGT CATGAAAATG
GATGTGGCAC ATCACGATGC AGTATTGGCT TACACCAGTC ACTTGCCGCA TTTGTTGGCT
TTTAATCTGG TTGAGCAGTT GGCGGATCAT GATGATAATA TGGATATTTT TCGTTATGCT
GCTGGCGGGT TTCGCGATTT TACCCGCATT GCCGCAAGCG ATCCGGTAAT GTGGCATGAT
ATTTTTATTG CCAACAAACC TGCTTTGTTA AATGCATTAG ATGAATACAG TCAATATCTA
GCTAAGCTAC GCCGCCTTAT TCAAGATGAG GATTCAACTC AGCTACTGGG GCTTTTGGGC
CGCGCTCAGT CTGCCAGAAA GCACTTTGGG CATATGCTAA CCGGTACCCC CTATACTAAA
AATCTCACGG AAATATCTAA CACAAAAACC AATACGGAAA ACTCTATGGC AACCTCAACC
CATGCCTCTA GTGCATACAT TATTACTCCA AGCTCAACCA TTAATGGCAC TATCGCTGTG
CCGGGTGATA AGTCAATATC ACATCGTAGC ATCATGTTTG GTAGCCTTGC TGAAGGCGTG
ACTCGGGTAA GTGGCTTTTT AGAAGGCGAG GATGCCCTAG CGACACTGCA AGCCTTTAGA
GACATGGGCG TGACTATTGA GGGGCCAGAA AATGGTAATG TGGTCATTCA TGGGGTAGGT
ATCAATGGTC TAAAGCCTAG TCGCACCCCT TTATATATGG GGAACTCAGG CACTACCATG
CGTCTATTAT CGGGTATTTT GGCAGCCCAA AGCTTCGATA GCGTATTAAC CGGCGATGCA
AGCTTATCTA AGCGCCCGAT GGAGCGTGTG GCCAAGCCGC TGCGTGAAAT GGGTGCCACC
TTACAGACCA CAGGAGAGCG AGGCACAGCG CCTATTAGCA TCACGGGCAG CGACAAGCGT
GGCAGTAAGC TGCATGGCAT CACTTATGAC ATGCCGGTGG CATCAGCTCA GGTAAAATCT
TGCTTAATCT TGGCCGGTCT ATGGGCTGAG GGGAAGACCA CCGTCATTCA GCCAGAGATT
AGCCGTGACC ACACCGAGCG TATGTTAAGC GCGTTTGGTT ATGATGTGGA AGTCGAGGGC
AATACCATCA GCGTTGAGGG CGGCGGTAAG CTGACTGCTT GTGATATTGC TGTACCTGCT
GATATCTCCT CAGCAGCATT TTTTATGGTG GCGGCCTCTA TTGCCAAAGA CAGCCAAATT
ACCATCACTC AAGTGGGTAT GAATCCGACA CGTACTGGTA TCATTGATAT CTTAAAGCTT
ATGGGTGCAG ACATTAGCCT AAGTAATGAG ACTTTTGTGG GCGGTGAGCC TGTGGCAGAT
ATCACTATCA AGTCGGCTCA GTTAAAAGGC ATTACCATTC CAGAGGCGCT AGTGCCCTTG
GCGATTGATG AGTTTCCAGT GCTATTCGTT GCCGCCAGCT GTGCCCAAGG TCAAACCGTG
TTAACGGGAG CCAAAGAGCT TCGTGTAAAA GAATCAGATC GTATCGCAGT AATGGCAGAT
GGTCTGACCC AATTGGGTGT GGACTGTGCA GTAACTGAAG ATGGCATTAT TATCGAGGGT
AAAGGCGATG GTCAATCTCA TCAAGCGGTG TTTGGCGGCG GTGAAATCTA CTCTCACCAC
GATCACCGTA TCGCGATGAG CTTCTCTGTG GCAAGCTTGC GTGCTACTGA CACCATTACC
ATTCAAGGGG TAGAAACCGT GAATACTAGC TTCCCAGGCT TTGCAGAGTT GGCAAATAAA
ATTGGTATGA ACCTAGCCAC TCGTCAGGGC TAA
|
|---|
| Protein sequence | MLFEQVCIVG LGLIGASLAQ AIRDRQLAAK LVAVDRHAPS IKSAIEAGVI DKGSDSLFEV
VAGSDCIILA VPVKAVGAVF ADINSAMQQG LITTACLISD VSSTKQNVVD AAQKAFGQLP
TGFVPAHPIA GAEQSGFHAR RSDLFVNHSL IVCELKSTTP KAIAQISQLW QSVGATVMKM
DVAHHDAVLA YTSHLPHLLA FNLVEQLADH DDNMDIFRYA AGGFRDFTRI AASDPVMWHD
IFIANKPALL NALDEYSQYL AKLRRLIQDE DSTQLLGLLG RAQSARKHFG HMLTGTPYTK
NLTEISNTKT NTENSMATST HASSAYIITP SSTINGTIAV PGDKSISHRS IMFGSLAEGV
TRVSGFLEGE DALATLQAFR DMGVTIEGPE NGNVVIHGVG INGLKPSRTP LYMGNSGTTM
RLLSGILAAQ SFDSVLTGDA SLSKRPMERV AKPLREMGAT LQTTGERGTA PISITGSDKR
GSKLHGITYD MPVASAQVKS CLILAGLWAE GKTTVIQPEI SRDHTERMLS AFGYDVEVEG
NTISVEGGGK LTACDIAVPA DISSAAFFMV AASIAKDSQI TITQVGMNPT RTGIIDILKL
MGADISLSNE TFVGGEPVAD ITIKSAQLKG ITIPEALVPL AIDEFPVLFV AASCAQGQTV
LTGAKELRVK ESDRIAVMAD GLTQLGVDCA VTEDGIIIEG KGDGQSHQAV FGGGEIYSHH
DHRIAMSFSV ASLRATDTIT IQGVETVNTS FPGFAELANK IGMNLATRQG
|
|---|
| |