| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1081 |
|---|
| Symbol | |
|---|
| ID | 5205323 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | + |
|---|
| Start bp | 1304575 |
|---|
| End bp | 1306245 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640599302 |
|---|
| Product | AMP-dependent synthetase and ligase |
|---|
| Protein accession | YP_001279981 |
|---|
| Protein GI | 148652888 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.267456 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGAATC ATTACAACGC CGCTGCCCAT GCTTACCAAT TTCCACTGAC CATCAAGCAG
TTATTAAACC GCTCAAAAGT CACTTCGCAA AATGAAGAGA TTGTCTATGC GGATAAAAAA
CGCATGACCT ATACGGAGCT GTTCTCACGT ATCGGTAAGC TTGCCAATGT CCTAGACAGT
CTTAATTTAG ATAAAGGGGA TGTGGTGGCG GTGATGGACT GGGACAGCCA CCGCTTTTTG
GAGTCTTACT TTGCCATTCC CATGTCGCAA TATGTGCTGC AGACCGTCAA CATCCGCTTG
TCTCCAGACA AAGTGCTGTA CACTATTAAC CATGCCAAGC CCAGAGTGCT ACTGCTAAAC
TCTGAGTTTG CGCCTATGGT AAAAGACTAT CAGTTTGAGA ACTCGTCGAT TGAGCATATT
ATTTGGCTCG ATGACAATGG GGTTAGTAGT GAGGGCGTGT TTGGTAATAA CCAAGCACGG
TTGTTAGGTG AATATGAAGC GCTGCTTGCC GAGGCCAGTG ATGAGTTTGA GTTTCAAGAT
TTTGATGAAA ACACCATTGC CACCACCTTT TATACCTCAG GCACCACGGG CAATCCTAAA
GGGGTGTTCT TTAGTCACCG TCAAATTGTA CTGCATGCGT TAGCAGAAGC GGCAACCTTG
GGTATATTGC CACAAAAGCA AGGGTTAGTG CTTGGCGATG TGTATATGCC GATGACACCC
ATGTTCCATG TGCTGGCATG GGGCTTTCCT TATACCGCAA CCATGCTGGG CATGAAGCAG
GTGTATCCGG GTCGTTATAT GCCTGATGTG ATGCTAAACT TAATTGAAAC CGAGAAGGTG
AGTATCACCC ACTGCGTGCC GACTATTTTG CAGATGTTAC TGAAGCAAGC AGAAGCTGAA
GGCAAGCGCT TTGATGGTCT AAAAATGATC ATTGGCGGCT CACGCTTAAC CGAAGGCTTG
GCAAAAACAG CCCTGTCAGC CGGCATTGAG GTATATACCG GCTATGGCAT GTCGGAGACG
GCGCCACTGA TTAGTTTGAC TGAATTTAGA TCAGATGATC CTGAGATGAG TCTAGAGGAA
GAGGCGAAGC GACGTAGCCT AACCGGCAAG CCGGTCATAA TGGTGGAGGC CAAAATTTGG
GATGGTGATG GCAATGCGCT ACCGCACGAT GGTAAGCAAA CCGGGGAGCT GGTGCTGCGC
GCGCCTTGGT TGACCCAGAG CTATTTCAAA AATGCCGATG CTGGCGTGGA GCTGTGGCAA
GGCGGCTATA TGCATACTCA AGATATCGCC TTTATGACTG AAGATGGTAC CTTAAAGATT
ACCGACCGCT TAAAAGATGT GATTAAGTCG GGTGGTGAGT GGATATCGTC CTTGGAGATT
GAGACCATTT TATCACTACA CCCTGCTGTC GCAGACGTGG CCGTTATCGG TGTGCGCGAT
GAGAAATGGG GCGAGCGTCC ACTGGCAGCG ATTGTGTTAA AGCCAAACTG CCAGGATGTA
ACGGTTGAGG ACATTAAAGC CATTGCCGAA AAAGCCGCCG AAAAAGGCAT GATTCCAAAG
TATGGCGTGC CTGAATACTA CAAGATTGTT GATGAATTAC CAAAGACTTC AGTGGGCAAA
CATGACAAAA AAGTCATGCG TGAGCTATAT GTGGGTCAAA CAACCATTTA A
|
|---|
| Protein sequence | MMNHYNAAAH AYQFPLTIKQ LLNRSKVTSQ NEEIVYADKK RMTYTELFSR IGKLANVLDS
LNLDKGDVVA VMDWDSHRFL ESYFAIPMSQ YVLQTVNIRL SPDKVLYTIN HAKPRVLLLN
SEFAPMVKDY QFENSSIEHI IWLDDNGVSS EGVFGNNQAR LLGEYEALLA EASDEFEFQD
FDENTIATTF YTSGTTGNPK GVFFSHRQIV LHALAEAATL GILPQKQGLV LGDVYMPMTP
MFHVLAWGFP YTATMLGMKQ VYPGRYMPDV MLNLIETEKV SITHCVPTIL QMLLKQAEAE
GKRFDGLKMI IGGSRLTEGL AKTALSAGIE VYTGYGMSET APLISLTEFR SDDPEMSLEE
EAKRRSLTGK PVIMVEAKIW DGDGNALPHD GKQTGELVLR APWLTQSYFK NADAGVELWQ
GGYMHTQDIA FMTEDGTLKI TDRLKDVIKS GGEWISSLEI ETILSLHPAV ADVAVIGVRD
EKWGERPLAA IVLKPNCQDV TVEDIKAIAE KAAEKGMIPK YGVPEYYKIV DELPKTSVGK
HDKKVMRELY VGQTTI
|
|---|
| |