| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_1039 |
|---|
| Symbol | |
|---|
| ID | 5205968 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 1246146 |
|---|
| End bp | 1247111 |
|---|
| Gene Length | 966 bp |
|---|
| Protein Length | 321 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640599260 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_001279939 |
|---|
| Protein GI | 148652846 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.204243 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATATAA CTTTGCGTCA ATTAAATGCA TTTATCCATG TGGCGGAAAC TGGCAGTTTT
ACGCGCGCCA GCGATAAAAT GCACCTCACC CAATCTGCAG TCAGTGGACT GATTAAAGAG
CTGGAGAATA CCTTAAATGT GGTGCTGTTT GACCGTACTA CTCGCCAGCT GTCGCTTTCT
GTGGTTGGCC ACCATTTATT ACCGCAAGCT CGGCGGGTAC TCAATGAGCT GACCTTATTC
GAAAATGAAG CCTCAAGCTT AACCAGCTTG GCTCAGGGCA CAGTACGTCT GGCGGTCTCA
CAATTTGCCG CCTCATCGAT GCCGGCGGTC ATTGCTCAAT TTGCCAAGCT GTATCCGGAG
ATTAAGGTGA GTCTGCTTGA CTGCTCAGCT GAGGATGTGC TGCAACATAT TGAAAACATC
GAGGTGGATT TGGGCGTGGG GGTTGAGCTA AACACCGATC AAAACGATGA AAACCTGAGC
GCTGATCTAC TATATGAGCT ACCGTTTTGT ATTGTGTTGC CACAAGCGCA TCCGCTGGCC
TGTGAGCCTG TGGTGAAATG GGATGATTTA TTGGGTCTGC CCCTAATCAC GCTCAACGGA
CCGTTTATTG ATCATGTCAC CTTAGAGCTC AGCGAGCCTA TGGCGCTACA AATCAAGAAT
GCTGCCTACA AAGTTAACTT TATGTCCACT GCGCTTGAGA TGACCCGCCA AGGATTTGGC
GTTACGCTAT GCCTACCTTA TATGCCTGAG GTCATCGACT GGATAAGTGC CAACAACCTA
GTGCTCAAGT GCTTGGCTGA GCCGGTTAAA TTACGCAAGT TTTATATCTA TCAGCGCTCA
TCACGGGCGC TATCGCCAGC GAGCAAAACC TTCAAATGCT TCTTACAGCA TTACTTTGAG
GATTACTTCA CCAGTCTTGC CAACATAGGT TTTTTATCTC ACACACCGAC TCAAGACAGC
CAATAG
|
|---|
| Protein sequence | MNITLRQLNA FIHVAETGSF TRASDKMHLT QSAVSGLIKE LENTLNVVLF DRTTRQLSLS
VVGHHLLPQA RRVLNELTLF ENEASSLTSL AQGTVRLAVS QFAASSMPAV IAQFAKLYPE
IKVSLLDCSA EDVLQHIENI EVDLGVGVEL NTDQNDENLS ADLLYELPFC IVLPQAHPLA
CEPVVKWDDL LGLPLITLNG PFIDHVTLEL SEPMALQIKN AAYKVNFMST ALEMTRQGFG
VTLCLPYMPE VIDWISANNL VLKCLAEPVK LRKFYIYQRS SRALSPASKT FKCFLQHYFE
DYFTSLANIG FLSHTPTQDS Q
|
|---|
| |