| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0953 |
|---|
| Symbol | |
|---|
| ID | 5204670 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | + |
|---|
| Start bp | 1139270 |
|---|
| End bp | 1140304 |
|---|
| Gene Length | 1035 bp |
|---|
| Protein Length | 344 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640599172 |
|---|
| Product | nifR3 family TIM-barrel protein |
|---|
| Protein accession | YP_001279853 |
|---|
| Protein GI | 148652760 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0042] tRNA-dihydrouridine synthase |
|---|
| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00000000354539 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.0013853 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAATG ATATGACATT ACCCACCACC TTGGCCGATC ATCCCTTATT GCAGCCATTA
TATATTGGCG GATTAGAGAT TCAGAACCGA TTGATGGTGG CGCCTATGGC TGGAGTAACA
GACAACCCGT TTCGACGCTT ATGCAAGTCG TTTGGGGCCG GTCATGCCGT CAGCGAAATG
ATGACGGCTG ATGCCACGTT ATATGCCCAT AAAAAGTCGT TATTTCGAGC CAACTTTGAG
GGAGAAATTG CTCCCATATC CGCGCAAATT GCAGGCGCAG ATGTTGATAA AATTGCTGAA
GCTGCTCAGT ATCAGGTCAA TAATGGGGCG CAGATTATTG ATATTAATAT GGGCTGCCCG
GCCAAGAAGG TGTGCCGTAA ACTGGCAGGC TCTGCTTTAT TAAAAGATGA AGATCTGGTG
GCACGTTTGC TGGATGCGAC AGTGGCCGCA GTGGATGCAC CTGTCACTTT AAAGACACGC
TTGGGCTATG AAAATGGACA GGAGAACATC TTGCGTGTGG CCAAACGAGC AGAAGAGGCG
GGCATTGCTG CCATTGCTAT CCACGGCCGT ACTCGAGAAG ACAAATACGG AGGTCAGGCC
CGTTATGATC TCATTCGTGA AGTAAAGCAA TTGGTTAACA TCCCGGTGAT TGCCAATGGC
GACATTGACA GCCCCCAAAA AGCCATAGAA GTGTATGAGC AGACCGGCTG TGATGCCATT
ATGATTGGTC GTGCTGCTCA AGGTCAGCCT TGGCTGTTTC GAGATATCGC CCATTATTTG
CAGACCGGTG AGATATTACC AGCCCCCAGT ATTGAGCAGT TAAGACAAAT TGTATTGACT
CATTTACAAG AGCTATATGA TTTTTATGGT GAATACTCAG GCTGCCGCAT CGCCCGCAAG
CACATTGCTT GGTATACCTC TGGTATCGAG GATTCTAACG CCTTTAGGCA GGCCATGTAT
GGCGAGGAGA GCACTGCTGG TCAATATAAA GTGGTGGATA AGTTTCTATC CTCTCATTCA
GCTCGTGAAC GCTAG
|
|---|
| Protein sequence | MANDMTLPTT LADHPLLQPL YIGGLEIQNR LMVAPMAGVT DNPFRRLCKS FGAGHAVSEM
MTADATLYAH KKSLFRANFE GEIAPISAQI AGADVDKIAE AAQYQVNNGA QIIDINMGCP
AKKVCRKLAG SALLKDEDLV ARLLDATVAA VDAPVTLKTR LGYENGQENI LRVAKRAEEA
GIAAIAIHGR TREDKYGGQA RYDLIREVKQ LVNIPVIANG DIDSPQKAIE VYEQTGCDAI
MIGRAAQGQP WLFRDIAHYL QTGEILPAPS IEQLRQIVLT HLQELYDFYG EYSGCRIARK
HIAWYTSGIE DSNAFRQAMY GEESTAGQYK VVDKFLSSHS ARER
|
|---|
| |