Gene PsycPRwf_0941 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPsycPRwf_0941 
SymbolsecD 
ID5204938 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePsychrobacter sp. PRwf-1 
KingdomBacteria 
Replicon accessionNC_009524 
Strand
Start bp1125011 
End bp1126888 
Gene Length1878 bp 
Protein Length625 aa 
Translation table11 
GC content47% 
IMG OID640599160 
Productpreprotein translocase subunit SecD 
Protein accessionYP_001279841 
Protein GI148652748 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value0.566023 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCATTACC CTGCCTGGAA ATATTTCTTA ATCGTCACCG TGCTCGTCAT CGCTGGGCTT 
TATGCTCTGC CGAATTTATA TCCTGACGAA CCTGCGGTTC AAGTAACCAG TGCCTCAGCA
GGTACCGAGC TGACTGAAGA GGTGCTAACC CAATCCACTC AACTGCTTGA TGAAGCGGGT
ATCGCCTATC ATGATCCCAC CTTCTCAGGT AACAGTGCTT TGTTACGTGT AGAAAACGGG
GCAGAGCAAC GAAAAGCTCA AGAAGTACTG CGCCAACAAC TTGGTAATGA CTATGTTGTG
GCTTTAAACC TGGCTCAAAC TACCCCAGAA TGGCTGCGCA GTATCGGTGC CAAGCCATTA
AAGCTTGGGC TAGACTTACG TGGTGGTGTG CGCTTTGTTC TTGAAGTTGA TATGAACAAA
GCCTTAGAGC AGCGTCTAAA AACCACCAGT AATGATGTGC GCAGTAGCTT ACGTGCTGAG
CGTGTGGCCG CCAAAGGTAT TAACGTGGTG GAGCAAGGCT TAGTACTGCA TTTTAAAGAT
GTTGATCTGC GTGACAAAGC ACAGCGCATT ATCCAGCGTG ACCATGGTGC CCAGTTTGAC
ATGCAGGCAT TGATGGATGA TCAAGGTCCT GCGCTGCGCC TGAATTATAA TGAGGCAACT
TTAAAAGAGA TTAATGAATA CGCAGTGGGT CAAAACTTAA CCACACTACG TAACCGTATC
GCTGAGCTTG GGGTATCAGA AGCGTTGGTT CAGTCGCAAG GCAGCAACCG TATTGTGGTT
GAATTGCCAG GTGTCCAAGA CACCGCTGAA GCCAAGCGTG TGTTAGGTCG TACCGCAAAC
TTAGAGTTTC GCTTAGTTGC TGATGAGAAC ACCACTTATG CAGGTGGCAT TCCTCCTGCA
GGCACCGAAG CCTTTCCTTA CATGACACTT GATGGCCCAC CATCTTTGCT AAACCGTCAG
CCCATCTTAA CGGGTGAAAA AGTCCAAGGC GCCACCTCTG GTCTAGATGA AAATGGGGCA
CCTGAGGTAA ATATTACCCT AGATACCGCT GGTGGTAAGC TGATGCAAAA TGCCACTAAG
AGCGCTGTTG GCAAGCAGAT GGCTGTACTG TTTATTGAAA ACAAACAAAA AATCGCCTAC
AGCAAAGATC CAAACACTGG CGAGACCATT GAGACGCGTA CCCCCTACGC TGAGACCAAA
ATCATTAGCC AAGCCAATAT TCAAGCGGTG CTGGGCTCCT CATTCCGTAT TACTGGCTTA
AACAGTAATG CTGAGGCCGC TGAGCTGGCA TTATTGCTTC GCTCTGGTGC TCTGGCTGCG
CCAATGTACT TCGTAGAAGA GCGCACCATT GGTCCGTCAC TGGGTCAACA AAACATCGAT
GATGGCTTGT TCTCAACTAA GATTGGTTAC TTACTGGTCT TCTTATTTAT GATCTTGTTC
TATCGTCTGT TTGGGGTGAT TGCCAATATT GCTCTGGCCT TTAACCTTAT TATTATGATT
GCGGTATTGT CTATCTTAGG GGCGTCTTTA ACCCTACCTG GTATTGCTGG TATCGTATTG
ACCATTGGTA TGGCGGTGGA TGCCAACGTG CTTATCTTTG AGCGTATACG CGAAGAGATT
GCCGAGGGCG TAAGGCCAAA ATCTGCTATT GTTGCCGGTT TTGACCGCGC CTTTAGCAGT
ATTTTTGATG GTAACATCAC CACGTTATTG GTCGCTATTA TCTTATTCTC AATTGGTTCT
GGTCCAATCA AAGGGTTCGC AATTACCCTA GCGATTGGTA TTTTAAGCTC GCTATTCACA
GCCATCATCG TGACACGTGC TTTGGTTCAC CTGATTTATG GCAATCGTAA ATCTGTCGAT
AAATTGAGCA TAGGCTAG
 
Protein sequence
MHYPAWKYFL IVTVLVIAGL YALPNLYPDE PAVQVTSASA GTELTEEVLT QSTQLLDEAG 
IAYHDPTFSG NSALLRVENG AEQRKAQEVL RQQLGNDYVV ALNLAQTTPE WLRSIGAKPL
KLGLDLRGGV RFVLEVDMNK ALEQRLKTTS NDVRSSLRAE RVAAKGINVV EQGLVLHFKD
VDLRDKAQRI IQRDHGAQFD MQALMDDQGP ALRLNYNEAT LKEINEYAVG QNLTTLRNRI
AELGVSEALV QSQGSNRIVV ELPGVQDTAE AKRVLGRTAN LEFRLVADEN TTYAGGIPPA
GTEAFPYMTL DGPPSLLNRQ PILTGEKVQG ATSGLDENGA PEVNITLDTA GGKLMQNATK
SAVGKQMAVL FIENKQKIAY SKDPNTGETI ETRTPYAETK IISQANIQAV LGSSFRITGL
NSNAEAAELA LLLRSGALAA PMYFVEERTI GPSLGQQNID DGLFSTKIGY LLVFLFMILF
YRLFGVIANI ALAFNLIIMI AVLSILGASL TLPGIAGIVL TIGMAVDANV LIFERIREEI
AEGVRPKSAI VAGFDRAFSS IFDGNITTLL VAIILFSIGS GPIKGFAITL AIGILSSLFT
AIIVTRALVH LIYGNRKSVD KLSIG