Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_0941 |
Symbol | secD |
ID | 5204938 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | - |
Start bp | 1125011 |
End bp | 1126888 |
Gene Length | 1878 bp |
Protein Length | 625 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640599160 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_001279841 |
Protein GI | 148652748 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 0.566023 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATTACC CTGCCTGGAA ATATTTCTTA ATCGTCACCG TGCTCGTCAT CGCTGGGCTT TATGCTCTGC CGAATTTATA TCCTGACGAA CCTGCGGTTC AAGTAACCAG TGCCTCAGCA GGTACCGAGC TGACTGAAGA GGTGCTAACC CAATCCACTC AACTGCTTGA TGAAGCGGGT ATCGCCTATC ATGATCCCAC CTTCTCAGGT AACAGTGCTT TGTTACGTGT AGAAAACGGG GCAGAGCAAC GAAAAGCTCA AGAAGTACTG CGCCAACAAC TTGGTAATGA CTATGTTGTG GCTTTAAACC TGGCTCAAAC TACCCCAGAA TGGCTGCGCA GTATCGGTGC CAAGCCATTA AAGCTTGGGC TAGACTTACG TGGTGGTGTG CGCTTTGTTC TTGAAGTTGA TATGAACAAA GCCTTAGAGC AGCGTCTAAA AACCACCAGT AATGATGTGC GCAGTAGCTT ACGTGCTGAG CGTGTGGCCG CCAAAGGTAT TAACGTGGTG GAGCAAGGCT TAGTACTGCA TTTTAAAGAT GTTGATCTGC GTGACAAAGC ACAGCGCATT ATCCAGCGTG ACCATGGTGC CCAGTTTGAC ATGCAGGCAT TGATGGATGA TCAAGGTCCT GCGCTGCGCC TGAATTATAA TGAGGCAACT TTAAAAGAGA TTAATGAATA CGCAGTGGGT CAAAACTTAA CCACACTACG TAACCGTATC GCTGAGCTTG GGGTATCAGA AGCGTTGGTT CAGTCGCAAG GCAGCAACCG TATTGTGGTT GAATTGCCAG GTGTCCAAGA CACCGCTGAA GCCAAGCGTG TGTTAGGTCG TACCGCAAAC TTAGAGTTTC GCTTAGTTGC TGATGAGAAC ACCACTTATG CAGGTGGCAT TCCTCCTGCA GGCACCGAAG CCTTTCCTTA CATGACACTT GATGGCCCAC CATCTTTGCT AAACCGTCAG CCCATCTTAA CGGGTGAAAA AGTCCAAGGC GCCACCTCTG GTCTAGATGA AAATGGGGCA CCTGAGGTAA ATATTACCCT AGATACCGCT GGTGGTAAGC TGATGCAAAA TGCCACTAAG AGCGCTGTTG GCAAGCAGAT GGCTGTACTG TTTATTGAAA ACAAACAAAA AATCGCCTAC AGCAAAGATC CAAACACTGG CGAGACCATT GAGACGCGTA CCCCCTACGC TGAGACCAAA ATCATTAGCC AAGCCAATAT TCAAGCGGTG CTGGGCTCCT CATTCCGTAT TACTGGCTTA AACAGTAATG CTGAGGCCGC TGAGCTGGCA TTATTGCTTC GCTCTGGTGC TCTGGCTGCG CCAATGTACT TCGTAGAAGA GCGCACCATT GGTCCGTCAC TGGGTCAACA AAACATCGAT GATGGCTTGT TCTCAACTAA GATTGGTTAC TTACTGGTCT TCTTATTTAT GATCTTGTTC TATCGTCTGT TTGGGGTGAT TGCCAATATT GCTCTGGCCT TTAACCTTAT TATTATGATT GCGGTATTGT CTATCTTAGG GGCGTCTTTA ACCCTACCTG GTATTGCTGG TATCGTATTG ACCATTGGTA TGGCGGTGGA TGCCAACGTG CTTATCTTTG AGCGTATACG CGAAGAGATT GCCGAGGGCG TAAGGCCAAA ATCTGCTATT GTTGCCGGTT TTGACCGCGC CTTTAGCAGT ATTTTTGATG GTAACATCAC CACGTTATTG GTCGCTATTA TCTTATTCTC AATTGGTTCT GGTCCAATCA AAGGGTTCGC AATTACCCTA GCGATTGGTA TTTTAAGCTC GCTATTCACA GCCATCATCG TGACACGTGC TTTGGTTCAC CTGATTTATG GCAATCGTAA ATCTGTCGAT AAATTGAGCA TAGGCTAG
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Protein sequence | MHYPAWKYFL IVTVLVIAGL YALPNLYPDE PAVQVTSASA GTELTEEVLT QSTQLLDEAG IAYHDPTFSG NSALLRVENG AEQRKAQEVL RQQLGNDYVV ALNLAQTTPE WLRSIGAKPL KLGLDLRGGV RFVLEVDMNK ALEQRLKTTS NDVRSSLRAE RVAAKGINVV EQGLVLHFKD VDLRDKAQRI IQRDHGAQFD MQALMDDQGP ALRLNYNEAT LKEINEYAVG QNLTTLRNRI AELGVSEALV QSQGSNRIVV ELPGVQDTAE AKRVLGRTAN LEFRLVADEN TTYAGGIPPA GTEAFPYMTL DGPPSLLNRQ PILTGEKVQG ATSGLDENGA PEVNITLDTA GGKLMQNATK SAVGKQMAVL FIENKQKIAY SKDPNTGETI ETRTPYAETK IISQANIQAV LGSSFRITGL NSNAEAAELA LLLRSGALAA PMYFVEERTI GPSLGQQNID DGLFSTKIGY LLVFLFMILF YRLFGVIANI ALAFNLIIMI AVLSILGASL TLPGIAGIVL TIGMAVDANV LIFERIREEI AEGVRPKSAI VAGFDRAFSS IFDGNITTLL VAIILFSIGS GPIKGFAITL AIGILSSLFT AIIVTRALVH LIYGNRKSVD KLSIG
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