| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0897 |
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| Symbol | dapD |
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| ID | 5206050 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | - |
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| Start bp | 1065832 |
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| End bp | 1066653 |
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| Gene Length | 822 bp |
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| Protein Length | 273 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 640599116 |
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| Product | 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase |
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| Protein accession | YP_001279797 |
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| Protein GI | 148652704 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2171] Tetrahydrodipicolinate N-succinyltransferase |
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| TIGRFAM ID | [TIGR00965] 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.11965 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCATTAG AACAAATTAT TGAACAAGCC TTTGAAAAAC GTGCCGAATA TAGCCCCGCG
ACTATGCCAC AAGAGGTAAA AGATGCGGTA AATAGCGTAC TAGACCAACT TGATAACGGT
AGCCTACGTG TCGCTGAAAA AAAAGACGGT GAATGGATCG TTAATCAGTG GGCCAAAAAA
GCGGTACTTT TATCTTTTCG CTTGAACGAT AACTACCCTA TGCAAACCGG TGAGCATGTA
CAGTTTTATG ATAAAGTTCC CACTAAGTTT GCTAACTGGA CTGAGCAGCA ATTCGTTGAA
GCCGGCGTCC GTGTTGTACC ACCAGCGGTA GCACGTCGTG GCTCATTTAT CGCCAAAGGC
GTGGTATTAA TGCCAAGCTA TACCAATATT GGTGCTTACG TGGATGAGGG CGCGATGATT
GATACTTGGG CCACAGTGGG CTCATGCGCT CAAATCGGTA AAAACGTACA CTTATCAGGC
GGTGTCGGCA TTGGTGGCGT ATTAGAACCC CTACAAGCCA ACCCTACTAT CATTGAAGAC
AATTGCTTTA TTGGTGCTCG CTCTGAGATT GTTGAAGGCG TTATTGTTGA AGAGGGCTCT
GTTATCTCAA TGGGTGTTTA TATCGGCCAA TCCACTAAGA TTTATGACCG TGAAACTGGC
GAAATTACTT ATGGCCGCGT ACCGGCGGGC TCTGTGGTAG TCTCAGGTAG CCTGCCCTCA
AAAGACGGTT CACACAGCTT GTATTGTGCC GTTATCGTCA AAAAAGTCGA TGCACAAACC
CGTTCAAAAA CCAGCATTAA TGAGCTACTG CGTCTGGCTT AA
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| Protein sequence | MSLEQIIEQA FEKRAEYSPA TMPQEVKDAV NSVLDQLDNG SLRVAEKKDG EWIVNQWAKK
AVLLSFRLND NYPMQTGEHV QFYDKVPTKF ANWTEQQFVE AGVRVVPPAV ARRGSFIAKG
VVLMPSYTNI GAYVDEGAMI DTWATVGSCA QIGKNVHLSG GVGIGGVLEP LQANPTIIED
NCFIGARSEI VEGVIVEEGS VISMGVYIGQ STKIYDRETG EITYGRVPAG SVVVSGSLPS
KDGSHSLYCA VIVKKVDAQT RSKTSINELL RLA
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