Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_0887 |
Symbol | |
ID | 5204944 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | - |
Start bp | 1051911 |
End bp | 1053671 |
Gene Length | 1761 bp |
Protein Length | 586 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 640599106 |
Product | RND efflux system outer membrane lipoprotein |
Protein accession | YP_001279787 |
Protein GI | 148652694 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.0000421492 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000263613 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACGACCT CTGTAACCTT AATTCCTGAT TCTAAAAGTC GAAGCGTGAG TGGTTCTGTT ATGCATACCC GAAAAAAATG GTCCCGTTTG TTTGGTCTAT CTGCTTTGAC AGTCGCAATC AGCGCCTGTC AAAGTGTTCC ACTGGCCGAC ACAAGCCCCA CAGTAGCCCG CCCCAATATT CCTTTGAATC CGGGCGAAAA CTATGAGCTT TATGGCAACA ACCAAGTGCC TTCAAGCCTA GCGGCTGTAC GTTGGCAGAG CTTTTATTCT GACCCTAAGC TAAAAGCGCT TATCCAAATG GGTCTGGATA ATAACAAAGA TGTTAAGCAA GCTGTCCTAG CCATTCAGAA AGCCCAAGCT CAGTACCGCA TTACTGACAG TAATGATGCG CCTAACTTAG GTTTGAATGG AGATTACTCA TACGGGGCAA GTAATGCTAG AGACCGTAAC CCTAGTGACA GCTTTAATGT AGGCCTAGGT ATGGCGGCTT ATGAGCTTGA TTTTTGGGGT AAAGTGGCAA GCTTAAAAGA CCAAGCGCTG CAAAATTACC TCAGCACCAC AGCCGCACGT GACACCGCTC AGGTCAGCTT GATTGCCAAT ATTGCCAAAA GCTATGTCAA TTTAAGCTAT CAGCAAAAGC AGCTAGAGCT TGCCATTAGT ACATTGCAGA CTCGAGAAGA GTCGCTACGC ATTACGCAAG CCCGCTTGGC AGCTGGCATT GACTCAAAAG CACCTTCGCT GCAAGCAGCT GCCTCTGCTG AGACGGCTCG TATTGCTGCA CTAAATGCTC AAAGCGGCGT ATTAAGAGCC AAAAATGCTT TGAAATTCTT GGTGGGTACC CAGATTAGCG AAGACATGAT GCCAGATCCC GCTATTCCTT CGATTACTTC AAGCCAAGTA TTAAGCGCAG GCTTGCCAAG TGACTTATTA CGCTACCGCC CTGATGTCTT GCAAGCTGAA TACAATCTAA AAGCGGCGGG GGCTAATATT GATGTGGCCC GAGCTGCCTA CTACCCTTCT ATTAGTTTGA CAGGCAACTT AGGCTACTCA AGTAGCGACT TATCTGACTT ATTTAAGAGC AGTGCTGGCA GTTGGTCGTT TGGACCCTCT ATTAGATTGC CTTTATTTGA TGCCGGTCAG CGTGATGCCA ACTATGAAGT GGCTCAAATT GAGCGTGATC AAGCCGTTGC CAATTACGAA AGTACAGTAG AGGCGGCGTT TAAAGAGGTC AACGATGTAC TGGCAGATCG AGCGACATTA GATGCCAGAA CTCAAGCAGA ATATCGCTTA CAAGAGAACT ATCAAGGTTT ATTTGATATC TCTGAAGCCC GCTTTAAGGC GCAAGTAGAT GACTACTTAG CGGTACTAGA TGCTCAGCGC TCACTGTTCT CCACTCAGCA GTCTATTTTG AACCTTGAGC AAGAGCGTCT AAATAACCAG ATTGAGCTGT ATCAAGTGTT AGGTGGCGGT GCCAACTTAG GTGCGGTGGC AGTACCTACC CCTAAATATC AAAACCTGGT CAATGTCCTT GATAATAAGA CCAATAAGCA AAAAGCGGTC AATGCTGTTG AAGCCAGTAA AGGGCCAAGA ATTGTCACCG CCCAAGAAGC TTACCTGCTT GAGCAGCAAA AGCCTGTGAA AGTTGTGGAA CAAAAACAAG CAACCCCAGT GGATATAAAC AACGACAACA ACACCGATGC TTATATCTCT GTGGTAGAAA CCACCACTGA GCCTGCTGAC TCTAAAGTGG TTCAGCATTA G
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Protein sequence | MTTSVTLIPD SKSRSVSGSV MHTRKKWSRL FGLSALTVAI SACQSVPLAD TSPTVARPNI PLNPGENYEL YGNNQVPSSL AAVRWQSFYS DPKLKALIQM GLDNNKDVKQ AVLAIQKAQA QYRITDSNDA PNLGLNGDYS YGASNARDRN PSDSFNVGLG MAAYELDFWG KVASLKDQAL QNYLSTTAAR DTAQVSLIAN IAKSYVNLSY QQKQLELAIS TLQTREESLR ITQARLAAGI DSKAPSLQAA ASAETARIAA LNAQSGVLRA KNALKFLVGT QISEDMMPDP AIPSITSSQV LSAGLPSDLL RYRPDVLQAE YNLKAAGANI DVARAAYYPS ISLTGNLGYS SSDLSDLFKS SAGSWSFGPS IRLPLFDAGQ RDANYEVAQI ERDQAVANYE STVEAAFKEV NDVLADRATL DARTQAEYRL QENYQGLFDI SEARFKAQVD DYLAVLDAQR SLFSTQQSIL NLEQERLNNQ IELYQVLGGG ANLGAVAVPT PKYQNLVNVL DNKTNKQKAV NAVEASKGPR IVTAQEAYLL EQQKPVKVVE QKQATPVDIN NDNNTDAYIS VVETTTEPAD SKVVQH
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