| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0778 |
|---|
| Symbol | |
|---|
| ID | 5204930 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 926589 |
|---|
| End bp | 928142 |
|---|
| Gene Length | 1554 bp |
|---|
| Protein Length | 517 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640598999 |
|---|
| Product | threonine dehydratase |
|---|
| Protein accession | YP_001279680 |
|---|
| Protein GI | 148652587 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1171] Threonine dehydratase |
|---|
| TIGRFAM ID | [TIGR01124] threonine ammonia-lyase, biosynthetic, long form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00418647 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTCAA AATGGGTTCG TAATGTTCTT CAGGCTACCG TATATGATGC CGCTATTCAG
ACACCTTTAG ACTATGCGCC AAAGCTATCT GCTCGTTTTA ACAATGACAT TCGTTTAAAA
CGTGAAGACT TACAACCTGT TTTTTCTTTT AAGCTGCGGG GCGCTTACAA CCGAATTAGT
CAGCTGACTG AGGCACAAAA AGCGCGTGGC GTAATTTGTG CCTCAGCCGG CAACCATGCG
CAAGGTGTGG CCTTCTCAGC TGCCAAATTA GGCCTTACCA ATACCATCGT CATGCCCACC
ACCACGCCCG ATATCAAGGT GCAAGCCGTC AAAGCCTTAG GGGGTAAAGT TGACTTATAT
GGTGACAGCT TCGATGTGTC TAACCAATAC GCCATCGAGC GCTCCATCAA AGAGGGGCTC
ACTTATATCC CGCCTTACGA TGATGAGTTG GTGATTGCCG GTCAAGGTAC CGTCGCGCTT
GAGCTTAATC AGCAGTGGCG CGATGTCGAG TATGTGTTCG TGCCTGTGGG CGGCGGCGGT
CTGTTGGCTG GTATTGCAGC CTTCTTAGGT GATGTGGCAC CCCAGGTGAA AATCATTGCG
GTCGAGCCTG AGGGCGCTGC GAGTTTAAAA GCTGCGATTG CGGCCAATAA ACCGGTCAAA
TTATCCCAAG TCAGCTTATT CGTCGATGGC ACCGCCGTCG CACAGATTGG CACCTTACCC
TTTGAGGTAG TCAGCCTCCA AAAAAGCGAT AATTCTGGCA AGCTTATCGA GCAGGAGGTG
GTCACCTGTA GTAATGATGA GGTCTGCGCT GCGGTCAAAG ATGTGTTTGA AGAAAGCCGT
AGTATTGTTG AGCCCTCAGG TGCACTGGCG CTGGCGGGTA TGAAAAAGTA TTTAAGCACC
CATAAATTGA CCGGCAAAAA TTGCGTTGCC ATTATTTCAG GCGCCAATAT GAACTTTGAT
CGCTTGCGTT ATATCGCTGA GCGCACCGAA ATTGGCGAGA AAAAAGAAGC GGTCTTTGCG
GTAACCATCC CTGAGCGCAC CGGTGCATTC TTAGAATTTT GCCGAGACTT AAAGGGCCGC
AACATCACCG AATTCAATTA CCGAGTACGC AATATAGCTG CTCCTGACTC GTTAGAGCCG
GCTTCGATTT TCGTTGGTAT TGCTCTAAAA GAAGGGGATA AAGAGCGCCA TACCATCGCC
AACTCTTTGC AAGAGGCAGG CTATAACGCA CACGACTTAA CCGATGATGA TATTGCCAAA
TCTCACATTC GTTATTTAAT CGGCGGCCAT GCTGGCCTAG CAGATGAGCA ATTGTTTAAA
GTCAGTTTTC CTGAACGTCC AGGCGCCTTG CTTAACTTCT TAGAAAAGCT TGGCACTGAC
TTTAATATTA CCCTATTCCA CTACCGCAAT CACGGCGCTG CAGATGGCCG AGTCTTAGTG
GGTATTCAGG CAACGGCCAC CAGCTCACGA GCCGTACAAG ATACACTACA AGAAATTGGT
TATGAGTGCT CGCCAGTATC TGACAACATC AGCTACCAGC TGTTTTTGAA GTAA
|
|---|
| Protein sequence | MLSKWVRNVL QATVYDAAIQ TPLDYAPKLS ARFNNDIRLK REDLQPVFSF KLRGAYNRIS
QLTEAQKARG VICASAGNHA QGVAFSAAKL GLTNTIVMPT TTPDIKVQAV KALGGKVDLY
GDSFDVSNQY AIERSIKEGL TYIPPYDDEL VIAGQGTVAL ELNQQWRDVE YVFVPVGGGG
LLAGIAAFLG DVAPQVKIIA VEPEGAASLK AAIAANKPVK LSQVSLFVDG TAVAQIGTLP
FEVVSLQKSD NSGKLIEQEV VTCSNDEVCA AVKDVFEESR SIVEPSGALA LAGMKKYLST
HKLTGKNCVA IISGANMNFD RLRYIAERTE IGEKKEAVFA VTIPERTGAF LEFCRDLKGR
NITEFNYRVR NIAAPDSLEP ASIFVGIALK EGDKERHTIA NSLQEAGYNA HDLTDDDIAK
SHIRYLIGGH AGLADEQLFK VSFPERPGAL LNFLEKLGTD FNITLFHYRN HGAADGRVLV
GIQATATSSR AVQDTLQEIG YECSPVSDNI SYQLFLK
|
|---|
| |