Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_0731 |
Symbol | |
ID | 5205159 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | + |
Start bp | 873596 |
End bp | 874450 |
Gene Length | 855 bp |
Protein Length | 284 aa |
Translation table | 11 |
GC content | 44% |
IMG OID | 640598951 |
Product | integrase catalytic subunit |
Protein accession | YP_001279634 |
Protein GI | 148652541 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG2801] Transposase and inactivated derivatives |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.100278 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 3 |
Fosmid unclonability p-value | 0.000000433601 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGCAAGAGA ATCGATTGAA ATACTGCATA CAACGTATGG CGACCGTATT TGAAGTCAGC CTATCAGGCT ACTATGACTG GCTAAAGCGA GGCATGAGCA AGCGAAAACA GCACCACAAT CGCTGTGAGT TACTGGTCAA ATCCGCTCAT ATGGATACAC AGCAAAGCTA TGGGCATGAA CGCTTGCATC AGCATTTAAC CAGCCAAGGA CACGACATCA GCCTGTACAT GGTTCGGCAA ATCAAGCAAG AACATGGTAT TTACTGCAAA CGCCACAAGC GATCTAAGGT GACTACTGAC TCAAATCATA ATAAGCCTGT GTATCCAAAC TTGTTAGAAC AGCAGTTTGA CGTGGCAGCA CCCAATATCG CTTGGGTTAG CGATATTACC TATATTTGGA CCAATGAAGG CTGGGTGTAC TTGGCAGCGT TCAAAGACTT GTACAGCAAA GAGATTGTGG GATATGCTCT AAATAAGCGT ATGACCGCTG ATTTGGTTTG TGAGGCTTTA AACAATGCCA TTAAGTACAA ACGCCCTGCT CGGGGCTTAA TCGTGCATTC TGACAGGGGT AGTCAGTATT GTAGCCATCA ATACCGCCAA ATCATCGACA AGTATGGTTT TGCTGGCTCT ATGAGCCGAA AAGGCAATTG CTACGATAAC GCCCCGATTG AAAGCTTCTG GGGTCAGTTA AAAAACGAGC TGATTTATCA CAAAGTCTAT GAGACTCGTG ATGAAGCCAT TAAGGATGTG GTTAGATATA TTGAGATTTT TTACAACCGT CAACGAATAC AAAAAGGGTT AGGATTTAAG TCACCTACTC AAGTATTCCA AGACTTTTAC CGTCAGGCTG CCTGA
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Protein sequence | MQENRLKYCI QRMATVFEVS LSGYYDWLKR GMSKRKQHHN RCELLVKSAH MDTQQSYGHE RLHQHLTSQG HDISLYMVRQ IKQEHGIYCK RHKRSKVTTD SNHNKPVYPN LLEQQFDVAA PNIAWVSDIT YIWTNEGWVY LAAFKDLYSK EIVGYALNKR MTADLVCEAL NNAIKYKRPA RGLIVHSDRG SQYCSHQYRQ IIDKYGFAGS MSRKGNCYDN APIESFWGQL KNELIYHKVY ETRDEAIKDV VRYIEIFYNR QRIQKGLGFK SPTQVFQDFY RQAA
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