| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0720 |
|---|
| Symbol | |
|---|
| ID | 5206645 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 861737 |
|---|
| End bp | 862717 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 640598941 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001279624 |
|---|
| Protein GI | 148652531 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 5 |
|---|
| Fosmid unclonability p-value | 0.000016714 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAAA AATATGCTAT TGAAATCGGC TTAATTGTCT ATGAGAAAGC ACAAATGGCG
GCCATCCTTG GGCTGACTGA TTTACTGATG GTGGCCAGTA AAATCGCTGC CGAACGTCAA
GATACAACCG ATCTGCCTTT ACAGGTCAGT CACTGGGAGA TTACGGGTTC TGAGCAGCAG
CCTACCTGCA CTTTTTCGAG CAATCCCGAT AGTGTAGGAA AATTAAAAGC CGTCATCATT
CCACCCACGT TAGAGGCGCC TACTGCAAAG CAAGCAGCAG CACCTTGGCT TGAATGGCTA
AAAGAGCATC ATTCAGGAGG TGTGATAATG TCATCTGTTT GCGCCGGTGC TTTTTTGTTG
GGCGAAACAG GACTACTATC TAAGCGCAAG GCGACTACGC ATTGGGGTTA TGCAGAGGAT
TTTAAGCAGC GCTTTTCTGA TGTGGATCTT GATGTGGATC GCATTATTAT CGAAGACGGC
GATATTGTGA CCGCTGGTGG CGCGATGGCT TGGACAGATT TAGGACTTAG AATGGTAGAT
CGCTTTCTTG GCTCACAAGT GATGAATGAG ACCGCTCGTG CATTGTTAAT TGACCCCTCA
AGGCGTGAAC AATGCTATTA CAGTGCGTTC TCACCCAACC TCACCCATGG TGACGCGGCC
ATACTAAAGG TGCAGCATTG GCTACAAAAA ACAGAGGCAC AGGATATTGA TTTATCCACC
CTAGCTAATT GTGCACAGTT AGAGGAGCGT ACTTTTCTGC GCCGTTTCCA TAAGGCGACG
GGCATGACAT CAACGGAATA CTGTCAGCGA TTACGCATCG GAGAGGCAAA AGATTTTCTA
CAGTTCTCTT TAACGCCTGT TGAGCAAATT GCGTGGAAGG TGGGTTATAG TGATGTCAGT
GCGTTTCGTA AGATATTTAA GCGCATTGTT GGTTTGACCC CTAGCGAATA TCGGCGCAGA
TTCAATACAA ATAAAGCGTG A
|
|---|
| Protein sequence | MNQKYAIEIG LIVYEKAQMA AILGLTDLLM VASKIAAERQ DTTDLPLQVS HWEITGSEQQ
PTCTFSSNPD SVGKLKAVII PPTLEAPTAK QAAAPWLEWL KEHHSGGVIM SSVCAGAFLL
GETGLLSKRK ATTHWGYAED FKQRFSDVDL DVDRIIIEDG DIVTAGGAMA WTDLGLRMVD
RFLGSQVMNE TARALLIDPS RREQCYYSAF SPNLTHGDAA ILKVQHWLQK TEAQDIDLST
LANCAQLEER TFLRRFHKAT GMTSTEYCQR LRIGEAKDFL QFSLTPVEQI AWKVGYSDVS
AFRKIFKRIV GLTPSEYRRR FNTNKA
|
|---|
| |