Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_0642 |
Symbol | |
ID | 5206329 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | - |
Start bp | 771864 |
End bp | 773072 |
Gene Length | 1209 bp |
Protein Length | 402 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640598858 |
Product | succinyl-diaminopimelate desuccinylase |
Protein accession | YP_001279547 |
Protein GI | 148652454 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
TIGRFAM ID | [TIGR01246] succinyl-diaminopimelate desuccinylase, proteobacterial clade |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.39661 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 37 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCACACAA GCGACCCATC GAATACCGCC ACTGACCATC AGCAACAAAC CTTAGAGCTT AGTATTGAGC TGATGCGCCG AGACTCTGTG ACACCTCACG ATAAAGGCTG TCAGGAGGTA TTGGTTGAGC GTTTAAGCCC GCTTGGATTT GTGCATGAGT TTATGTATTT TGGTGATGAG CAAGCCAGCG GACGCGATGC ACAGGTAAAA AACCTATGGG CCAGACGTGG CAACCAAGAC CCTGTGGTGT GCTTCGCCGG CCATACCGAT GTGGTGCCTA CCGGTAATCC GGACAATTGG CGCATTGCGC CTTTTGACGC CAAAGTACAT GATGGCTACC TTTGGGGACG TGGTGCGGCT GATATGAAAA CCGGTATTGC CGCCTTTACT GTCGCTACTG AGCGCTTTGT CAAAAACCAT CCTGACCATA ATGGCTCAAT CGCCATGCTG ATTACCTCAG ATGAAGAAGG CCCATCAATT AATGGTACGG TTAAAGTGAT TGAGGTTTTA GAAGCACGAA ATGAGAAAAT AACCTATTGC TTAGTCGGTG AGCCATCAAG TACAGACAGC TTAGGTGATG TGATCAAAAA TGGGCGCCGT GGCTCGTTGG GCGGTATTTT AACGGTGACC GGCAAACAAG GCCATGTCGC CTACCCTCAT TTAGCGGTTA ATCCAATTCA CGCTTTATTG CCTGCTTTGG CTGAGTTTAG CGTTACTGAA TGGGACAAAG GCAATGACTT TTTCCCAGCA ACGTCGATGC AAATCTCAAA CATCAACGGT GGTACTGGTG CAAACAATGT GATTCCAGAA ACCGTTGAAG TGGTGTTTAA CTTTAGATTC TCGACTGAAA CCACCGAAGA AGAATTACGC GCCAAAACCC ATGAAATCTT GGACAAGCAC TTTGCCAATA CTGAGGCTAC CTATGAGATT GACTGGAAAT TATCAGGCCA TCCGTTCTTA ACTGCTGAAG GCAAGCTGGT AGATGCGTGT AAAGTAGCCA TTAAAGACAT TACCGGTACC GACACTCAGT TATCGACCTC GGGCGGTACT TCTGACGGCC GCTTTATTGC GCCAACTGGT GCGCAAGTGG TCGAGCTTGG CGTGCGTAAT GCGACCATTC ATCAGGTGGA TGAGCGTGTG GAGATTGATG ATATTGGTAA ATTGGCTCAG ATTTATGAGC GTATGCTAGA AGAGTTGTTG CTGGGTTAG
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Protein sequence | MHTSDPSNTA TDHQQQTLEL SIELMRRDSV TPHDKGCQEV LVERLSPLGF VHEFMYFGDE QASGRDAQVK NLWARRGNQD PVVCFAGHTD VVPTGNPDNW RIAPFDAKVH DGYLWGRGAA DMKTGIAAFT VATERFVKNH PDHNGSIAML ITSDEEGPSI NGTVKVIEVL EARNEKITYC LVGEPSSTDS LGDVIKNGRR GSLGGILTVT GKQGHVAYPH LAVNPIHALL PALAEFSVTE WDKGNDFFPA TSMQISNING GTGANNVIPE TVEVVFNFRF STETTEEELR AKTHEILDKH FANTEATYEI DWKLSGHPFL TAEGKLVDAC KVAIKDITGT DTQLSTSGGT SDGRFIAPTG AQVVELGVRN ATIHQVDERV EIDDIGKLAQ IYERMLEELL LG
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