| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0578 |
|---|
| Symbol | ispH |
|---|
| ID | 5204513 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | + |
|---|
| Start bp | 695083 |
|---|
| End bp | 696039 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 640598793 |
|---|
| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
|---|
| Protein accession | YP_001279483 |
|---|
| Protein GI | 148652390 |
|---|
| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0761] Penicillin tolerance protein |
|---|
| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.0251388 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.183753 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAAATTT ATCTTGCCAA CCCTCGTGGG TTTTGTGCCG GTGTTGACCG TGCTATTGCT
ATTGTAAATG AAGCATTGGC ACGCTTTGAG CCGCCCATTT ATGTACGCCA TGAAGTGGTG
CATAACAAAT TTGTGGTGTC TGATTTGGCC AATCGCGGCG CGGTGTTCGT AGAAGAATTA
CATGAAGTAC CCGATGGCTC TATCGTTATC TTCTCAGCAC ATGGGGTGTC AAAAGCGGTA
GAAGATGAGG CTGAGCGCCG AGATTTAACG GTATTTGATG CGACCTGTCC TTTGGTAACC
AAAGTGCATA TTGAGGTGGC CAAGTTCGCC CGTGAAAAAA TGGATGCGGT GCTTATCGGT
CACCAAGGTC ACCCAGAAGT TGAGGGCACC ATGGGCCGCT TTAGCGCGCA ATATGGTGGC
GAGATTCATC TGGTAGAAAA TGAGGCAGAT GTCGAAAAAT TAGAAGTGAG TGATCCTGAT
CGTCTGGCCT TTGTGACTCA GACCACCTTG TCTATGGATG ACACAGCAGT GGTCATTGAT
GCGCTGCGCA AAAAATTCCC TAACATTCAA GGGCCACGCA AAGATGACAT CTGTTATGCC
ACCCAAAACC GTCAAGATGC AGTCAAAGAC TTAGCTCAGC GCTGCGAAGT GGTATTGGTG
GTGGGTTCTC CCAACTCCTC TAACTCAAAC CGTCTACGCG AATTAGCGGA GCGTATGAAC
TGCAAAGCTT ACTTAATTGA TAATGCCGGT GAGATGAAAA AAGAGTGGTT TGCTGGGGTG
GGCGCTGTGG GTGTCACCGC CGGTGCATCA GCGCCAGAGA TTCTTATTCA AGAGGTGTTA
AATCAGCTTC AACAATGGGG CGGAGATTTA CCTGATGAGC TCAAAGGGAT TGAAGAAAAT
GTGACCTTTA GCTTACCAAA AGAGCTGCGC ATCCCCGTAA AAGAGGTGGG CTTATAA
|
|---|
| Protein sequence | MQIYLANPRG FCAGVDRAIA IVNEALARFE PPIYVRHEVV HNKFVVSDLA NRGAVFVEEL
HEVPDGSIVI FSAHGVSKAV EDEAERRDLT VFDATCPLVT KVHIEVAKFA REKMDAVLIG
HQGHPEVEGT MGRFSAQYGG EIHLVENEAD VEKLEVSDPD RLAFVTQTTL SMDDTAVVID
ALRKKFPNIQ GPRKDDICYA TQNRQDAVKD LAQRCEVVLV VGSPNSSNSN RLRELAERMN
CKAYLIDNAG EMKKEWFAGV GAVGVTAGAS APEILIQEVL NQLQQWGGDL PDELKGIEEN
VTFSLPKELR IPVKEVGL
|
|---|
| |