Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_0473 |
Symbol | |
ID | 5205218 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | + |
Start bp | 561020 |
End bp | 563080 |
Gene Length | 2061 bp |
Protein Length | 686 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640598688 |
Product | DNA ligase, NAD-dependent |
Protein accession | YP_001279378 |
Protein GI | 148652285 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTCAAA ACACAGCAGA CACTCATGCC TCAGCACAAG CTCAAGAGGT CATTGCAAAA ATGCGTACCT TGATCGCACA GGTGCGTAAA CACAACAATG CTTATTATGT GATGGATGAG CCGACCATCA GTGACAATGA ATATGACCAG TTGCGCTTAA GTCTCATTGA GCTTGAGGAG CGTTATCCTG AGTTAACTCA GCCCGACAGT CCGACGGCTA GCGTGGGCGA CAATCCTCTG CCGTCATTCT CCCAAGTGCA GCATGACATT GCTATGCTGT CACTGGGTAA TATTTTTAAT TATCAAGACT TACAAGAGTT TATGCGCCGG GTCAATGACC GTCTAAGTGA TGCTGATCGA AATCCTGAGT ATGAGATTGA GATGAAATTA GATGGTTTGG CTGTTTCATT AAAATATCAT AACGGACAAT TTGTGCGCGG CGTGACTCGC GGCGATGGTC AAATGGGCGA GGACATTACC CAAAACGTGA AGACCATCAA TAACATTCCA CTGGTGATAG AAGCGGCGCA AGATATTGAT GTGCTTGAGG TGCGGGGCGA GGTACTGATG CCAAAAGCAG GCTTTAAGCG CTTAAACCGT TTGGCACAAG AAAATGGTGA TAAAACCTTT GCCAACCCCC GTAACGCAGC AGCAGGTAGT CTACGTCAAT TAGACCCAGC CGTGGCTGCC AGTCGTCCTT TGGCTTTTTA TGCGTATTCG GTGAACCAAG GCTTGCCTGA AGCGATTACT TTGCAATCGG CGGCTTTGAC CTGGCTTAAG CAGTTAGGCT TTACTGTTAG TGACTTTGAA CGGGTAAAAA CAGCCCAGCA AGTTCAAGAC TACTATGAGT CGATGATACA AAAACGGGCA GATTTAGCCT TTGAAATTGA TGGGATGGTT ATTAAGGTTG ATGACTTAAC GCTACAAAGT CAACTGGGCG CGTTATCACG TGAACCGCGC TGGGCCACCG CCTATAAGTT CCCTGCTGAA ACGGTGATGA CCACACTCAA TAGTATTGAA TGGCAAGTGG GGCGTACCGG TCAGCTGACT CCAGTGGGCA AGCTTGAGCC AGTGCAAGTG GGCGGTGTGA CGGTCAGTAA CGTGACCTTG CACAACTTCG GGGAAATCCA GCGCCTTGAT GTGCGTGCAG GTGATACCGT CAGCGTCCAC CGAGCGGGCG ATGTGATACC TAAAGTGACT CGGGTATGGC ATGATTTGCG CCCTGAGGGT ACCTCGGCGG TGACGCTGCC AACCCACTGT CCTGTGTGCG ACTCACCTGT GGTATTGCCA GAGGGTGAAG CCTTGGCACG CTGCACCGGT GAGCTGTTTT GTCCTGCGCA GCAGCAAGAG GCACTAATTC ACTTTGTATC ACGTAAAGCG ATGGATATTG ATGGGCTCGG TGAGCGCTGG TTAATCAGTT TCTTTGAGCA TGGCATCGTC AAAACTGTGG CCGATATTTA TCATTTAAAT GAGCATGCCG ATGAGCTGGT TACTCTAGAA AAATTGGGCG AGAAGTCCGT TAGCAATATG TTGCGCGCCA TTGAAGAGAG TAAAAAAACC ACACTGGCGC GCTTTATCTA TGCGCTAGGC ATTCGCGGTG TGGGAGAGAC CACAGCACAG AATCTGGCAC AATATTTTGG TGATTTGCCT GAATTGATGG GCGCCAGCAT TGACGCCTTA GAGGCCGTAC CTGACGTGGG CCATATTACC GCTGAGCTTA TTTATAATTT CTTCCGTGCT GAGCATAACA TCGAAGTCAT TAACGCATTG CAGCAAGCTG GCGTGTATTG GGATAAGGTA GAGCAGCAGG CCTTAGACAA TCTACCCCTT GAGGGCCAAA CGTGGGTGAT AACAGGTACC TTGGTCGCCA GCGGTATGTC ACGCGATGAT GCCAAAGCGC ATCTGCAAGC TTTGGGTGCA AAGGTCTCAG GCAGCGTATC GGCCAAAACC TCGGCATTAT TGGCCGGTGA AAAGGCAGGC TCTAAGTTGA CCAAAGCGCA GAGTCTGGGA GTGCGTGTGG TGTTAGAGGA TGAGTTCTTA AAGATGATTG GGGCGTCATG A
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Protein sequence | MTQNTADTHA SAQAQEVIAK MRTLIAQVRK HNNAYYVMDE PTISDNEYDQ LRLSLIELEE RYPELTQPDS PTASVGDNPL PSFSQVQHDI AMLSLGNIFN YQDLQEFMRR VNDRLSDADR NPEYEIEMKL DGLAVSLKYH NGQFVRGVTR GDGQMGEDIT QNVKTINNIP LVIEAAQDID VLEVRGEVLM PKAGFKRLNR LAQENGDKTF ANPRNAAAGS LRQLDPAVAA SRPLAFYAYS VNQGLPEAIT LQSAALTWLK QLGFTVSDFE RVKTAQQVQD YYESMIQKRA DLAFEIDGMV IKVDDLTLQS QLGALSREPR WATAYKFPAE TVMTTLNSIE WQVGRTGQLT PVGKLEPVQV GGVTVSNVTL HNFGEIQRLD VRAGDTVSVH RAGDVIPKVT RVWHDLRPEG TSAVTLPTHC PVCDSPVVLP EGEALARCTG ELFCPAQQQE ALIHFVSRKA MDIDGLGERW LISFFEHGIV KTVADIYHLN EHADELVTLE KLGEKSVSNM LRAIEESKKT TLARFIYALG IRGVGETTAQ NLAQYFGDLP ELMGASIDAL EAVPDVGHIT AELIYNFFRA EHNIEVINAL QQAGVYWDKV EQQALDNLPL EGQTWVITGT LVASGMSRDD AKAHLQALGA KVSGSVSAKT SALLAGEKAG SKLTKAQSLG VRVVLEDEFL KMIGAS
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