| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0411 |
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| Symbol | |
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| ID | 5205482 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | + |
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| Start bp | 503074 |
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| End bp | 505206 |
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| Gene Length | 2133 bp |
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| Protein Length | 710 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 640598625 |
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| Product | 1-deoxy-D-xylulose-5-phosphate synthase |
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| Protein accession | YP_001279316 |
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| Protein GI | 148652223 |
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| COG category | [H] Coenzyme transport and metabolism
[I] Lipid transport and metabolism |
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| COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
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| TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0259186 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCAAT ATTCTAACTC CACTACGCCC AAGCCTGCGC CCTCGCAACA AATGGACTCA
ACCTCTGAAG ATAACAGTGT TGATATGGCC ATTTCGGATG CTGTGGCAAA AAAGCCGGCA
GCCATGCGCC TATTTAGTGC AATTCCTACA ACACGTCCTA CGACCCCTTT ATTAGATAGT
ATAGAGTCTC CTGCTGATTT AACACCCTTA TCTCAGGCTC AGTTGCTTGT TTTAGCAGAT
GAGTTACGTG AATACTTGCT ATATTCTGCC GGTCAAAGCG GCGGACATTT TGGTGCAAAC
TTGGGGGTGA TTGAATTAAC CATCGCTTTG CATTACCTAT TAGATACCCC AAAAGATAAG
CTGGTCTGGG ACGTCGGTCA TCAGGCCTAT GCCCATAAAG TGTTGACTGG TCGTAGAGAT
CGTTTGGCCA CTATTCGCGC CAAGCAAGGT CTGACTGCTT TTCCTGAGCG TCAAGAGTCT
GAATATGATA CCTTTGGGGT AGGCCATTCT TCTACCTCGA TTTCAGCAGG CTTAGGCATG
AGCTTAGCGC TGCGTCACCT CAAGTCAGAT GCCAAAGTCG CTTGTGTGAT TGGTGATGGC
GCCATGACCG GTGGTATGGC TTTTGAAGCT TTAAATGATG CAGTACAACA AGACGCTGAT
TTATTGGTGG TTCTCAACGA CAATGACATG TCGATCTCTT GCTCAATTGG GGGCTTTTCG
CGCCACTTGG CCATGCTTTG GGAATCAGGC TATCAGGTAG ATATTACGGC AGGTGGCAAG
CCTAAGCTGA CGCATCGTCC TGAGATGCCT TTGGCGGATC GCCGAGCACG TCACAGCGCC
ATACGCGATA TTCCCCAAGT GGCTGATAAC TTATTCAAAG CCATTGGTTT TACCTATTTT
GGCCCCTTTG ATGGTCATGA CTTACCTGAA TTACTAAGGG TGCTTGAGCG TGCCAAAAAC
GTCTCAGGGC CGGTACTGGT CCATGTCTAT ACCACCAAAG GTAAAGGCTT TATCCCCGCT
GAAGGCGATC CGGTAAAATA CCATGCTATT AGCAAATTGC CCGAAAAACT AGAGCCCAAA
GCTGCCGACG CTCAAGCCAA CTTCGAAAAA CAAGCATCTG TCCAAAGCGC CCCAACTCAG
CTGACTAAGA AAAAGTACTC TGATGTTTTC GGTGACTTCT TATGCGATAA AGCGGCAGTA
GACCCAAAGC TGATTGCCAT TACACCGGCT ATGGAGTCCG GCTCTGGTAT GACGGAGTTT
GCACAGCGTT ATCCTAAGCA GTTTTTTGAT GTGGCGATTG CTGAGCAGCA TGCCGTGACT
TTGGCAGCGG GTATGGCCAC TTTAGACGTT AAGCCTGTGG TCGCGATTTA TTCCACTTTT
TTGCAGCGTG GTTATGATCA GCTGATTCAT GATGTGGCCT TACAAAATCT AGATGTCACT
TTTGGTATTG ACCGGGCAGG CTTGGTCGGG GAAGATGGAG CGACCCATGC AGGCGTGTTT
GATTTGGCTT ATATGCGCTG CGTGCCAAAC TTAATCGTTG CCACCCCAAA AGATGAACAT
GAGTGCTACC AATTACTCAA CACATGCTAT GAGTATCAAG GCCCAAGTGC GGTACGTTAC
CCTCGTGGTA CCGGCCCTGG TGCCACTATT GTTAAACCTG CTCAGTGCTA TGAGGTCGGT
AAAGGGGTGA TTGAGTCGAC TCATCATTCA GACTCAAGCG CTCAGCCTGA AGTGAAGATT
GCGCTACTGG CCTTTGGACC CATGGTCACT ACCGCTGAAG CGGCGGCGCA AAACTTAATC
GCTGCCACCG AGCTTGGTGC CATTACTGTG AGCGTGGTAA ATATGCGCTG GGTTAAGCCA
CTGGACACCC AGCTGTTAGA TGAGCTGTTG GCGCAAGGCT ATACTCATAT GGTAACTTTA
GAAGAGCATG CAGTCATGGG CGGCGCCGGC AGTGCGGTTA ATGAGTATTT ACTCAATCAC
ACCACATGCA TTCAGCAAGG CGTGCGTATA AAAAATATTG GTATTGCTGA TGAGTTTATC
GCGCATGGTA GCCATGAACA ACAATTGGCC GAATGTGGCT TAGATGTGGC TGGCGTTACT
GCTCACCTGC AGGCGCTACT TGCGGTAAAA TAA
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| Protein sequence | MQQYSNSTTP KPAPSQQMDS TSEDNSVDMA ISDAVAKKPA AMRLFSAIPT TRPTTPLLDS
IESPADLTPL SQAQLLVLAD ELREYLLYSA GQSGGHFGAN LGVIELTIAL HYLLDTPKDK
LVWDVGHQAY AHKVLTGRRD RLATIRAKQG LTAFPERQES EYDTFGVGHS STSISAGLGM
SLALRHLKSD AKVACVIGDG AMTGGMAFEA LNDAVQQDAD LLVVLNDNDM SISCSIGGFS
RHLAMLWESG YQVDITAGGK PKLTHRPEMP LADRRARHSA IRDIPQVADN LFKAIGFTYF
GPFDGHDLPE LLRVLERAKN VSGPVLVHVY TTKGKGFIPA EGDPVKYHAI SKLPEKLEPK
AADAQANFEK QASVQSAPTQ LTKKKYSDVF GDFLCDKAAV DPKLIAITPA MESGSGMTEF
AQRYPKQFFD VAIAEQHAVT LAAGMATLDV KPVVAIYSTF LQRGYDQLIH DVALQNLDVT
FGIDRAGLVG EDGATHAGVF DLAYMRCVPN LIVATPKDEH ECYQLLNTCY EYQGPSAVRY
PRGTGPGATI VKPAQCYEVG KGVIESTHHS DSSAQPEVKI ALLAFGPMVT TAEAAAQNLI
AATELGAITV SVVNMRWVKP LDTQLLDELL AQGYTHMVTL EEHAVMGGAG SAVNEYLLNH
TTCIQQGVRI KNIGIADEFI AHGSHEQQLA ECGLDVAGVT AHLQALLAVK
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