| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0395 |
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| Symbol | |
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| ID | 5204580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | - |
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| Start bp | 478378 |
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| End bp | 481200 |
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| Gene Length | 2823 bp |
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| Protein Length | 940 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 640598609 |
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| Product | 1A family penicillin-binding protein |
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| Protein accession | YP_001279300 |
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| Protein GI | 148652207 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.0000119849 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCCTCAAT CGTCTGCTAA CTCTCGTCTT ATCCATTATA TTGTGTCCAT TTTGTTGGCC
ATCGTAGCGC TGGCCCTCAT TTTGGTTCTG GCATTCCCTA TTGGATTTTA TGGGATGGCC
ATGTACATCA CGCCTAACTT GCCCAGTATC TCTGAGATGA AAAGTACCAA TCTTGAGATG
CCTTTGCAGA TTTATAGTAA AGATGACAAG TTAATCGGCC AATACGGCAA TCGTATGTCA
TTACCGGTGA CCTATGATGA CATTCCAAAG AATTTTATTA ATGCCTTTTT GGCAGCAGAA
GACTCTTCAT TCTATGAGCA CAGTGGGATT AGTATTAAGG GTTTAGGCCG TGCCATTACT
GAGATTATTA CAGAAGACGG CGGTCAGACA GGTGGTTCTA CCATTACCAT GCAGGTAGCT
AAGAACTACT TTTTAAGCCC CGAGCGTACT TTTAGCCGTA AGCTAACTGA GTTGTATCTG
GCGCGTAGTA TCGAAGATCA GCTGAGCAAA GAAGAGATTT TAACCTTATA CGTTAATAAG
ATTTATATGG GTGAAGGCGC CTACGGTATT CGTGCGGCGG CCAAAAAATA TTACAGTAAA
TCGCTCGATA AGCTAACCAT CGCTGAGATG GCAACCTTAG CCGGTCTACC TAAAGCACCG
TCACAAAACA ACCCTGTGTC AAATCCTGAA GAAGCACTTG AGCGACGTAA CTGGATTTTG
GGACGCATGT TAGAGCTTGG TTATATCACC CAAGCTCAGC ATGACACAGC CGTCAAAGAA
CCCATCGGCG TGCATTTGTA CAAAGAGCAG CTGGATGTGA ACATGCCCTA TTTGGCAGAG
ATGACCCGCC GTACCTTGGT AGATCGCTAT GGCGAGGAGG TGGTCAATGC CGGCTGGCGT
GTTAAGCTTA CTGTCGATAG TGAAGACCAA AAAGCGGCAG ATACCGCCAT TAAAAAAGGT
CTGATTGGCT ATGATCGTCG TCACGGCTGG CGCGGTGTGG AAGCACATGG TGAACCTTTA
TCCAAATTCA CCACGTATTC TAATATGGTA CCGGCCAAGG TAGTAGAGGT CAGCGGCCGC
AGCTTTAAGG CTGAGTTAGC AGATGGCGAA GTGGTCACCG TACCTTGGTC AGGCATGAGC
TGGGCCAAAG AATACTTAGA TGCCAATCGC ATCAGACGCT ACCCTAACAA TGCCTCAGAT
CTTGTCAAAA AAGACGATAT CGTGCGTTTA ATTGCCAACG AAAATAAAAC CGCTTGGCGC
TTAACTCAAA TACCCAAAGT TCAAGGTAGC TTGGTTGCGC TCGACCCTAA GACTGGTGCG
GTTGACGCCT TGGTTGGTGG CTTTGATTTC CGTTATAGTA AATTTAACCG AGCCACTCAA
GGTTGGCGTC AGCCCGGCTC AACCATCAAG CCTTTAAACT ATGCGGCGGC CTTAGAAAAA
GGCTATCGTC CCGACAGTAT GATTTCAGAT GGTCCGCTGC GTATTGGTGA TTGGCAGCCC
AAAAACTCCG ATAACCGCTT TTATGGGGAT ATGACCATTC GCCGTGGCCT TATTTTGTCA
CGTAACCTAG TGTCTATTCG CCTATTACAA GCCGTTGGCA CCTCAGATGC ACGTCAATTA
TTAGATCAAT TTGGTTTGGA TAAAGACAAG CTACCCACCA CCTTATCGCT TGCTTTAGGG
GCAGGTCAAG CAACGCCTCT ACAGATGGCC ACTGCGTATT CCGCCTTTGC CAACGGCGGT
CACCGCATTC AGCCGTACTT TATTGATCAA ATTTATGATT ATGACAATAA GCTGTTGTAC
TTGGCCAACC CACAACGTGC TTGCGCATTA TGCTTTAACA ATGATCTACA AAAACTCAAT
GCTAAGCTAA AACAAGACTA TGAGAAGCAG GCCGAAGCCG ATGCCAAATT ACACCAATTG
GCGTTAAAAG CGCTAGCAGA AGATCCTAAG CTATTACAAG TCGCGGATAG TACTCAGTCC
GAAACTGTAG ACTCAGCGGA TGACGGCGCA GAGGATGAGG CAGATAACGC CAAGGCCAAA
CCAAAAAATA GCAAAGCGTC ATTACAAGCA GCCATTGAGG CCATCCGCTA TGATGCTGGC
CCACAATCTG ATCGCTTGAA GCCTGTACCG ATTACCTATC AAGTGGCTGA CCAAGCCCCA
CGTATCTTAA AGCCAAATGT GGCTTATGAG ATGGCGGGCA TGCTGCGTGA CGTTATTCAA
AGAGGAACGG GCACTCGAGC CAAAGCCTTA GGCCGTACAG ATGTCGGTGG TAAGACAGGG
ACGACCAATG AGATGAAGGA TGCTTGGTTT GCCGGCTTCC ACCCCACTCA AGTCTCTATT
GTATGGGTGG GCTTCGATCA ACCCTCAACG CTAGGTCGAG GCGAATATGG TGGTGTGGCT
GCCCTACCTA TTTGGGTAGA TTATATGCGC ACTGCGTTAA AATCTGTGCC TTATCAGTGG
GTTAGTGTCA ATAATAAAGC CAAATCAGAA ACCGCAAAAC AAGAGGTGAT TAATTTATCC
GATGATAATG ACAACACCAC AGCCGGTGCT ACTGGCAGCG GCAGCGATGC TCGTATCACC
AATCAAAAGG TCACAGACGG TGTTGTCAGA CCACCAAGAG CCTCTTTGAT TGAAAGGCAG
CCGCCTAAAC CGGTTGAACC CCCTAAGCCG GTCAATAGCA ACAATAACAG CAACAGTAAT
AGCAGTACCA ATGCCGATAC CAGCAGTACC AGAGCAGCGC CAAAACCTGC TCCCAAACCC
GCTGAGAAGC CCAAAGCTGA ACCTAAGCCT ACAGAGAACA AAGCCGCACC GGCCAATGAC
TAA
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| Protein sequence | MPQSSANSRL IHYIVSILLA IVALALILVL AFPIGFYGMA MYITPNLPSI SEMKSTNLEM
PLQIYSKDDK LIGQYGNRMS LPVTYDDIPK NFINAFLAAE DSSFYEHSGI SIKGLGRAIT
EIITEDGGQT GGSTITMQVA KNYFLSPERT FSRKLTELYL ARSIEDQLSK EEILTLYVNK
IYMGEGAYGI RAAAKKYYSK SLDKLTIAEM ATLAGLPKAP SQNNPVSNPE EALERRNWIL
GRMLELGYIT QAQHDTAVKE PIGVHLYKEQ LDVNMPYLAE MTRRTLVDRY GEEVVNAGWR
VKLTVDSEDQ KAADTAIKKG LIGYDRRHGW RGVEAHGEPL SKFTTYSNMV PAKVVEVSGR
SFKAELADGE VVTVPWSGMS WAKEYLDANR IRRYPNNASD LVKKDDIVRL IANENKTAWR
LTQIPKVQGS LVALDPKTGA VDALVGGFDF RYSKFNRATQ GWRQPGSTIK PLNYAAALEK
GYRPDSMISD GPLRIGDWQP KNSDNRFYGD MTIRRGLILS RNLVSIRLLQ AVGTSDARQL
LDQFGLDKDK LPTTLSLALG AGQATPLQMA TAYSAFANGG HRIQPYFIDQ IYDYDNKLLY
LANPQRACAL CFNNDLQKLN AKLKQDYEKQ AEADAKLHQL ALKALAEDPK LLQVADSTQS
ETVDSADDGA EDEADNAKAK PKNSKASLQA AIEAIRYDAG PQSDRLKPVP ITYQVADQAP
RILKPNVAYE MAGMLRDVIQ RGTGTRAKAL GRTDVGGKTG TTNEMKDAWF AGFHPTQVSI
VWVGFDQPST LGRGEYGGVA ALPIWVDYMR TALKSVPYQW VSVNNKAKSE TAKQEVINLS
DDNDNTTAGA TGSGSDARIT NQKVTDGVVR PPRASLIERQ PPKPVEPPKP VNSNNNSNSN
SSTNADTSST RAAPKPAPKP AEKPKAEPKP TENKAAPAND
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