Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_0349 |
Symbol | dapF |
ID | 5205333 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | + |
Start bp | 421543 |
End bp | 422424 |
Gene Length | 882 bp |
Protein Length | 293 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640598561 |
Product | diaminopimelate epimerase |
Protein accession | YP_001279254 |
Protein GI | 148652161 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.000000570655 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 5 |
Fosmid unclonability p-value | 0.0000127535 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCTTATAG AGTTTACAAA AATGCATGGG CTGGGCAATG ACTTTATGGT CATTGACTTG GTCACTCAGC GTTTGGAGCT GACACCAGAG CTGATTACAT TATTGGCTGA TCGTAACTTA GGTATTGGCT TCGATCAGCT GTTGGTGGTT GAGCCACCCA TGCGTCCAGA TGTTGATTTT CGCTACCGCA TCTTTAATTC AGATGGTAGT GAAGTGGAGC AATGTGGTAA TGGGGCACGC TGTTTTGCCC GGTTTGTACA GGCGCGCAAA CTGTCATTCA AGCAGCGTAT TCGGGTTGAA ACCAAGTCAG GTATTTTGAC GTTATCGACC GATAATTACG GCTGGGTAGA GGTGGATATG GGCAAGCCGC GCTTTGAGCC GGCAGAGATC CCTTTTACGC CCAAAGCCAT TACTAAAATA CAAAACGCTT ATCACCTAGA TGTCGAGGGG ACGCCGGTAC AATTGTATGT GGCCAATATG GGCAACCCAC ATGCGGTTAT TAAGGTCGAT GATATCTTGA CGGCCGATGT TGAGAAGCTT GGCAAAGCCA TTGAGTCGCA TCCGGCATTT CCTGAGCGGG TCAATGTTGG CTTTATGCAG GTGATGAACC AGCGTCACAT TCGTCTGCGT GTCTATGAGC GCGGTGTGGG CGAGACCCAA GCTTGTGGTA CAGGTGCTTG TGCGGCGGTC GCTACAGGCA TTCGCGAAGG CTGGCTGGAT GAGGGCGAGG AGATTAGAGC GCAGCTTTAT GGCGGCAGTT TACTGATTCG CTGGTCACCT GGCTATTCTG TGATGATGAC CGGCCCGACC GCTTTCGTCT ATGAAGGTGT GTTTAGTCCT GATGGTATTA TGGCGCAGGC CGGTCTTAAG CCATTAAGCT AG
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Protein sequence | MLIEFTKMHG LGNDFMVIDL VTQRLELTPE LITLLADRNL GIGFDQLLVV EPPMRPDVDF RYRIFNSDGS EVEQCGNGAR CFARFVQARK LSFKQRIRVE TKSGILTLST DNYGWVEVDM GKPRFEPAEI PFTPKAITKI QNAYHLDVEG TPVQLYVANM GNPHAVIKVD DILTADVEKL GKAIESHPAF PERVNVGFMQ VMNQRHIRLR VYERGVGETQ ACGTGACAAV ATGIREGWLD EGEEIRAQLY GGSLLIRWSP GYSVMMTGPT AFVYEGVFSP DGIMAQAGLK PLS
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