| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0250 |
|---|
| Symbol | |
|---|
| ID | 5205012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | - |
|---|
| Start bp | 290754 |
|---|
| End bp | 292751 |
|---|
| Gene Length | 1998 bp |
|---|
| Protein Length | 665 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 42% |
|---|
| IMG OID | 640598460 |
|---|
| Product | polysaccharide biosynthesis protein CapD |
|---|
| Protein accession | YP_001279155 |
|---|
| Protein GI | 148652062 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.0234353 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGAAACA ATCATAAAAG CAATCATAGC AATAAAGATT CTGATAACTA CCTAGGTAGC
GCTTCTCATT CATCTCCTAA GTGGAGTGGA ATCGCAGAAA CACTATTAAG TTTACCAAGA
CCAGTAAAGC AGGCTGTTTT ATTAGTTGGT GATTATATCA TCTCTATTGT TTGCCTATTT
TTAGCACTAT CACTTCGTCA AGGCGTGCTC GATGTTAATG CCAGCCCTTT ACTGGTCGCT
TTATATGCCC TCGTACCGAT TTTAGGCTTA TATGTGGTTG GATTTTACCG CGGTGTGACT
CGTATCTTCT TCGATACTGA TATGCGCCGC GTGCTTAAGC TATTTATCAT TATTTTAATT
GTCTTTACTG TTGTCTACCT ATTTGACTTT ATTACCAGTA TCCCGCGTTC AGTGCCGCTA
TTGTATTTGT TTATGCTGTT TATCTGGCTA TGGGGTAGCC GACTATTTCT ACGTGACTTA
TTACTGCGCT TACAGGGCAA ACCCATCTAT CAAGACTTAA GTAAAAGCTC TATCGAGCGT
GATAATGTGC TTGTCTATGG TGCTGGTTCT TCAGGTACTG CATTATTAGA AGCCTTACAA
GACTCTCCTC GCTATCAAGT GGCTGCCTTT ATTGATGATG ATAATCGCTT AACTGGTGGC
CATATCTTAA ATAAAAAAAT CTATCCCGCC ACACAGATTG AAAGCTTGGT TGAAGAGCTA
AACATCGCTC AAGTGTTTCT CGCTATGCCT TCGGTCAATC GTCAGCGTCG TCGTGAGATT
ATCAACGATT TAACCAATCT GTCTGTAAAA ATCAAAGAGC TACCTAGCCT GCAGGATATC
GCTGAGGGTA AAGTAACGGT TAGCACCATG CGTCGCGTTG ATATCTTAGA TGTATTAGAC
CGTCAGACCG TTGATCCTAA TCCTGTCTTA TTAGCCAAGA ATATTGAAGG CAAAAATGTT
TTGGTTACTG GTGCTGGCGG CTCAATCGGT AGTGAGCTGT GTCGACAAAT TATCAAGAAC
AAGCCTAAAT GCTTGGTATT ATACGAATTA TCTGAATACG CTCTGTATGC CATTCACCAA
GACTTATTAG CTTGGCAAGC GACTAACTCA GTAAGTAGTG ATAATTCTCC CACACATATC
ATTGCTCTAT TAGGTAACGT TAACAACCAA CAAAAATTAA ACATGGTATT TAACGAATAC
GCGATTAATA CCGTGTATCA TGCGGCAGCT TATAAGCATG TGCCAATTGT AGAATATAAC
CCCTTTGAGG GCGTTATCAA TAATGCCAAA GGCACGTATC ACTGCGTAAA AGCCGCTGTT
GAGTCGAATG TAGAAACCTT TGTACTGATA TCAACGGATA AAGCGGTACG CCCTACTAAT
ATCATGGGCG CTTCTAAGCG CTTAGCAGAG CTGGTATGCC AGGGCTTTGG TAACCAGAAC
CCTAGTACGA AAATCAGCAT GGTACGCTTT GGTAATGTCT TGGGCTCATC AGGCTCAGTG
GTTCCACTAT TTACCAAACA AATAGCCAAA GGTGGCCCGA TTACGGTGAC TCATCCAGAA
GTAACTCGCT ACTTTATGAC TATTCCTGAA GCCGCTAACC TAGTCATACA AGCAGGCGCT
ATGGCACAAG GGGGCGAAGT CTTTGTATTA GATATGGGTA AACCGGTAAA AATTGTCGAT
TTGGCACGCC GTATGATTCA CTTAAGTGGC TATGAGGTGA AGGATGAGAA TAACCCTGCT
GGTGATATCG AGATAGTCTT CAGTGGTCTA CGCCCGGGCG AGAAGCTTTA TGAAGAGCTT
ATCATTGGCG ATGATAATAT TGAAGCCACT CAGCATTCGT TAATTATGCA AGCACGTGAG
CACAGCTTCG AGTTAACTGA TATTGAAAAC ACTTTATCTG AATTAGCATC TAGAGCTCAA
TACCATGATG TGGGCTGGTT AAAGCAGCAA TTTACTCATT ATGTAGAAGG CTATACGCCA
GAGTCTAATC TAAATTAA
|
|---|
| Protein sequence | MRNNHKSNHS NKDSDNYLGS ASHSSPKWSG IAETLLSLPR PVKQAVLLVG DYIISIVCLF
LALSLRQGVL DVNASPLLVA LYALVPILGL YVVGFYRGVT RIFFDTDMRR VLKLFIIILI
VFTVVYLFDF ITSIPRSVPL LYLFMLFIWL WGSRLFLRDL LLRLQGKPIY QDLSKSSIER
DNVLVYGAGS SGTALLEALQ DSPRYQVAAF IDDDNRLTGG HILNKKIYPA TQIESLVEEL
NIAQVFLAMP SVNRQRRREI INDLTNLSVK IKELPSLQDI AEGKVTVSTM RRVDILDVLD
RQTVDPNPVL LAKNIEGKNV LVTGAGGSIG SELCRQIIKN KPKCLVLYEL SEYALYAIHQ
DLLAWQATNS VSSDNSPTHI IALLGNVNNQ QKLNMVFNEY AINTVYHAAA YKHVPIVEYN
PFEGVINNAK GTYHCVKAAV ESNVETFVLI STDKAVRPTN IMGASKRLAE LVCQGFGNQN
PSTKISMVRF GNVLGSSGSV VPLFTKQIAK GGPITVTHPE VTRYFMTIPE AANLVIQAGA
MAQGGEVFVL DMGKPVKIVD LARRMIHLSG YEVKDENNPA GDIEIVFSGL RPGEKLYEEL
IIGDDNIEAT QHSLIMQARE HSFELTDIEN TLSELASRAQ YHDVGWLKQQ FTHYVEGYTP
ESNLN
|
|---|
| |