Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PsycPRwf_0164 |
Symbol | |
ID | 5205685 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Psychrobacter sp. PRwf-1 |
Kingdom | Bacteria |
Replicon accession | NC_009524 |
Strand | + |
Start bp | 193089 |
End bp | 195203 |
Gene Length | 2115 bp |
Protein Length | 704 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640598376 |
Product | polynucleotide phosphorylase/polyadenylase |
Protein accession | YP_001279073 |
Protein GI | 148651980 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
Num covering plasmid clones | 23 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCAATGT TTAATACCAT CTCTCGAGAG TTCCAGTACG GCAACGAACA AGTTGTTATT GAAACCGGTC GTATCGCACG ACAAGCCAAT TCAGTATTGG TTCATATGGG CGGCGTATCA GTATTGGTCG CTGTGGTTGT AAAAAGCGAT GCTAAAGAAG GTCAAAACTT CTTCCCGCTA ACCGTCAACT ATCAAGAAAA AATGTACGCT GCTGGTAAAA TTCCAGGCGC TTACGGCAAA CGTGAAGGCC GTCCTACTGA GTTTGAAACC CTAACCTCAC GTCTCATTGA CCGTCCCATC CGTCCTTTAT TCCCAGAAGG TTATGTCAAC GAGATCCAGA TTACTGCCAC AGTCATCTCA AGTGACAAAA AGCACTATGC TGATATCGCT GCCATGATTG GTGCTTCAGC TGCACTTTCA ATCTCAGATG CGCCGTTTAA TGGCCCTATT GGTGGTGCCC GCGTAGGCTT TATCAATGGC GAATACGTGC TTAACCCCTC AATTGAAGAG TTAAAGAGCA GTGATCTTGA CTTAGTAGTG GCGGGTACTA AATCAGCGGT ATTAATGGTT GAGTCAGAAG CTGCTGAGCT GTCTGAAGAC CAAATGCTGG GCGCTGTATT GTACGGTCAT GAACAGCAGC AAATTGTTAT CGATAATATT GCTGAGCTGG CCAAGGCCGT GGGAACTCAA AAACAAGACT TTGTGGCACC TGAGCTAAAT GCTGAGTTAA AAGAAAAAGT AACCACACAG TTTGGTGAGC AAGTGGCTGA AGCTTATGCC ATTAGCGATA AGCAAGCACG CTACGAAAAA CTAGATGAGA TCAAGGCTGC GGCTATTGAC GCCTTAGCAG GTGACCCTGA GTCAGAAGAG TTTGCTGAAA AAGAAGCTCA AATTAAAGAA ATCTATAATG ATCTAAAATA TCGCACCGTT CGTGACGCCA TTTTGTCAGG TAAGCCACGT ATCGATGGTC GTGATTTAGA TACCGTTCGT GCGCTAGATA TTCAAGTAGG TGTATTGCCT TACACTCATG GTTCAGCGCT ATTTACCCGT GGTGAGACGC AAGCTCTAGT CACCACGACT TTAGGTAATT CACGTGATGT AAACTTGATT GACTCGCTAG CGGGTACTAT CCAAGATCAT TTCATGCTGC ATTACAACTT CCCGCATTAT TCAGTGGGTG AAACTGGCCG TGAAGGCGTG CCAAAGCGTC GTGAAATTGG TCATGGCCGT CTGGCTCGCC GTGGTGTTCA AGCCATGCTT CCAGACAGCG ACCGCTTCCC ATACGTTATC CGTGTGGTGT CTGAGATTAC TGAATCAAAT GGTTCGTCTT CAATGGCGTC AGTTTGTGGT GCCAGCCTTG CCTTAATGGA TGCCGGTGTG CCGTTAAAAG CCCCAGTAGC TGGTATCGCT ATGGGTCTGG TCAAAGAAGG CGACCGCTTT GCTGTCTTAT CAGATATCCT AGGTGATGAA GATCATTTAG GTGATATGGA CTTTAAAGTG GCCGGTACTA AAGATGGTAT CACAGCCTTA CAGATGGATA TTAAGATTGA AGGTATCACC TCAGATATCA TGGAAAAAGC ACTTGAGCAA GCTCATGCCG GCCGTATCCA TATCTTAAAT GCCATGAACG AAGTATTGCC AGCCAGCCGT ACTGAAATCA ATGCCCATGC ACCAAACTAT GCGGTCATCG AAATCAATTC TGATAAAATC CGTGATGTGA TCGGTAAAGG CGGCGCAACC ATCCGTCAAT TAACCGAAGA CACCGGTGCG GTTATCGATA TTGATGACAA TGGTACCATT CGTATCTTTG GTGAAAACAA AGCCGCGACC AAAGAAGCCA TCCGTCAAAT CGAAGCCATC ACCGCTGAAG TGGAAGTGGG CAAAGTATAC AAAGGCACCG TTGCGCGCGT TGTAGACTTT GGTGCATTCG TAACGGTTTT ACCAGGTACT GATGGTCTGG TACACATCTC ACAAATCGCT GATGAGCGTG TAGAGAGCGT ATCGGATTAC CTAAGTGAAG GCCAACAAAT CAATGTGTTG GTGCAAGATG TAGACAACCG TGGTCGCATC AAATTAACCA TGAAAGGCGT TGAGCAAGAG CAGACTCAAG CTTAA
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Protein sequence | MSMFNTISRE FQYGNEQVVI ETGRIARQAN SVLVHMGGVS VLVAVVVKSD AKEGQNFFPL TVNYQEKMYA AGKIPGAYGK REGRPTEFET LTSRLIDRPI RPLFPEGYVN EIQITATVIS SDKKHYADIA AMIGASAALS ISDAPFNGPI GGARVGFING EYVLNPSIEE LKSSDLDLVV AGTKSAVLMV ESEAAELSED QMLGAVLYGH EQQQIVIDNI AELAKAVGTQ KQDFVAPELN AELKEKVTTQ FGEQVAEAYA ISDKQARYEK LDEIKAAAID ALAGDPESEE FAEKEAQIKE IYNDLKYRTV RDAILSGKPR IDGRDLDTVR ALDIQVGVLP YTHGSALFTR GETQALVTTT LGNSRDVNLI DSLAGTIQDH FMLHYNFPHY SVGETGREGV PKRREIGHGR LARRGVQAML PDSDRFPYVI RVVSEITESN GSSSMASVCG ASLALMDAGV PLKAPVAGIA MGLVKEGDRF AVLSDILGDE DHLGDMDFKV AGTKDGITAL QMDIKIEGIT SDIMEKALEQ AHAGRIHILN AMNEVLPASR TEINAHAPNY AVIEINSDKI RDVIGKGGAT IRQLTEDTGA VIDIDDNGTI RIFGENKAAT KEAIRQIEAI TAEVEVGKVY KGTVARVVDF GAFVTVLPGT DGLVHISQIA DERVESVSDY LSEGQQINVL VQDVDNRGRI KLTMKGVEQE QTQA
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