| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0055 |
|---|
| Symbol | |
|---|
| ID | 5204532 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Psychrobacter sp. PRwf-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009524 |
|---|
| Strand | + |
|---|
| Start bp | 69161 |
|---|
| End bp | 70510 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640598263 |
|---|
| Product | permease YjgP/YjgQ family protein |
|---|
| Protein accession | YP_001278965 |
|---|
| Protein GI | 148651872 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0795] Predicted permeases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.853634 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCTA GGCATACTGA CCACTCCGAT GCGTCAAAAG ACATTCGCTC AGGCCGGATT
ATCTCGCGCT ATGTCAAAAA AAACGCCCTG TTTGCCATGC TATTTGCCGT ACTAGGCTTG
TGGGCATTGC AGATGGTGTT TGCTTATTTA GCAGAGCTTG AAGACATCTC TGATGCGTAT
ACTTATGTTG ATGCCTTAAC TTATATCTTT TATCGATCGC CTTACTTTTT GCAGCAGTTT
ATGCCCACAG GTGCCCTACT TGGGGCAGTG GTGGGACTGG GCTTGTTGGC CAATAACTCT
GAGCTGATCG TCATGCGTGC GGCAGGCTTA AGCATTTATC GCATTGTGGG GTGGGTGCTG
CAGCCGGCTT TTATCTTTGT GATTTTAGCG CTGCTGATTA ACCAGTTTAT ATTGCCACAA
AGCAATGTCA AAGCGAGTCA AATCCGTAAG CCAGATACTG CTTTATTGGC CTCAGTTAAT
GGATACTGGA CACTACAAAA TGCACCCACT GAAGCGGGCA GCACTACGGA TAATAAAGAG
GGCTTATCCA GCGAGCAGGC GCACAATATT ATCTTTATTG ACTATGCCGA TGCCAATGGC
AATATCGGTG AGGTCAAGCG CTGGCACTTA GATGCGGACA ATAACTTAAC CGCTGTCTCT
AAGGCCACGG GTGGCACTTA TGTGCCTAGT CTGCAACAGG GTCAAGACAA GCCGGTGGTA
GCGGCGCAAG ATCAATCAGA TTCTTTGGCC AATTACCAAT GGCAGCTAGA TAATGTCACC
ACCTTAAAGG TGGCCGATAA GGCAGCTATT TTAGAGTCAG ATACCTTAGG CAATCAGCCA
GCAGCACAGC TAACGGACAC GCAGGCTACC TCAGTGGATA GCGATCAGTC AGGACAAGCA
ATGGCGCTCA CGAGCCAGCC TTTGGTGGCC AAGCAAGCTG AGTCGACAGA TGTGATTAAC
CTGCCCATCT CACCAAGCTC GGTGTATCTG CTGACCCGCC GTGCCGAAGA TTTGTCATTG
ACTCAGCTGT ATGAGCACAA GCGCTTTAAC GCCTCACAAG GCACACGATC ACTGGAGCAT
GAGGTGGCGT TTTGGCAGAA GCTATTGTCA CCTTTTTCAG TGTTATCCTT GGTGATCGTG
GCCTGCTCAT TCGTGTTTGG CTCACTGCGT ACACACAGCT TAGGCTTGCG TATTGTGGTG
GCAATTATTT TTGGCCTGCT GTTTAGCTAT ATTCAAGACT TGACCAGCTT CGTGTCCTTG
GCCACCGGCG CACCGCCATT GTTAATGGTA CTGTTGCCCA TTATCGGTAG TGGACTGTTG
GGTTTTTATT TAATTCGACG TCAAGGCTAA
|
|---|
| Protein sequence | MKPRHTDHSD ASKDIRSGRI ISRYVKKNAL FAMLFAVLGL WALQMVFAYL AELEDISDAY
TYVDALTYIF YRSPYFLQQF MPTGALLGAV VGLGLLANNS ELIVMRAAGL SIYRIVGWVL
QPAFIFVILA LLINQFILPQ SNVKASQIRK PDTALLASVN GYWTLQNAPT EAGSTTDNKE
GLSSEQAHNI IFIDYADANG NIGEVKRWHL DADNNLTAVS KATGGTYVPS LQQGQDKPVV
AAQDQSDSLA NYQWQLDNVT TLKVADKAAI LESDTLGNQP AAQLTDTQAT SVDSDQSGQA
MALTSQPLVA KQAESTDVIN LPISPSSVYL LTRRAEDLSL TQLYEHKRFN ASQGTRSLEH
EVAFWQKLLS PFSVLSLVIV ACSFVFGSLR THSLGLRIVV AIIFGLLFSY IQDLTSFVSL
ATGAPPLLMV LLPIIGSGLL GFYLIRRQG
|
|---|
| |