| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PsycPRwf_0024 |
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| Symbol | oppD |
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| ID | 5204497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Psychrobacter sp. PRwf-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009524 |
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| Strand | + |
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| Start bp | 34884 |
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| End bp | 35930 |
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| Gene Length | 1047 bp |
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| Protein Length | 348 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640598232 |
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| Product | oligopeptide transporter ATP-binding component |
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| Protein accession | YP_001278934 |
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| Protein GI | 148651841 |
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| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
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| COG ID | [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component |
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| TIGRFAM ID | [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.586703 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCGTAT TACAAGACAG CAAAGCGCCA GATTTATTGC AGGTCAAAGA CTTATCGGTA
CAATTTAAGA CCGAAGATGG ACTGGTCACT GCCGTAAATG GGCTAAATTT TAATCTTCAC
CAAGGTGAAA CTCTGGGCAT CGTAGGGGAG TCCGGCTCGG GCAAGTCACA GACTGCCTTT
GCCATCATGG GGCTACTTGC CAAAAACGGT CTGACCAAAG GCTCAGTATT ATTCGAAGGT
CGTGAGCTGC TAGGCATGTC ACAAAAGCAC TTAAACAAGC TGCGTGCTGA GCAAGTGTCA
ATGATTTTCC AAGATCCGAT GACCTCGCTA AACCCTTATA TGAAAATCGG CGATCAGCTG
GCTGAAGTGC TTATCTTGCA CAAAGGCATG AGCAAAAAAG AGGCTTGGGA GGAGGCCATC
AAGATGCTTG ATGCGGTAAA AATCCCCGAG GCCCGCAAGC GTATCGGCAT GTATCCGCAC
GAATTCTCAG GTGGTATGCG CCAGCGGGTA ATGATTGCTA TGGCACTGCT TTGCCGTCCT
AAGCTGCTGA TTGCCGATGA GCCGACCACC GCACTTGATG TGACGGTACA AGCACAGATT
ATGACTTTGA TGAATGAGCT AAAGCGTGAC TTTGGCACCA CCATCATTAT GATTACCCAT
GACTTAGGCG TGGTCGCAGG TATTTGTGAT CGGGTATTGG TCATGTATGC TGGCCGTACT
ATGGCTTATG GTCATACCGA AGAAATCTTC TACAATCCGA CTCACCCTTA TACCAAAGGC
TTGCTGCGAG CGATTCCACG TCTTGATAAT GACAGCGGTC AGCTTGAGAC CATCCCTGGT
AGCCCGCCAA ACCTACTCAA CCTGCCTGCC GGCTGTCCTT TTTATGAGCG CTGCACTTAT
GCGATGGAGC TGTGCCGTGA TGTGCCGCCA CCGCTTGAAT TTCTGCCCAA TGAAAGACAG
CGTGCTTGCC ACTGGAAGCC TGAAGATGTG GCCAATACAG AGCCGCAAGA TGCCCAAGCT
CAACTTGCAA ATAACATAGA GGGATAA
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| Protein sequence | MSVLQDSKAP DLLQVKDLSV QFKTEDGLVT AVNGLNFNLH QGETLGIVGE SGSGKSQTAF
AIMGLLAKNG LTKGSVLFEG RELLGMSQKH LNKLRAEQVS MIFQDPMTSL NPYMKIGDQL
AEVLILHKGM SKKEAWEEAI KMLDAVKIPE ARKRIGMYPH EFSGGMRQRV MIAMALLCRP
KLLIADEPTT ALDVTVQAQI MTLMNELKRD FGTTIIMITH DLGVVAGICD RVLVMYAGRT
MAYGHTEEIF YNPTHPYTKG LLRAIPRLDN DSGQLETIPG SPPNLLNLPA GCPFYERCTY
AMELCRDVPP PLEFLPNERQ RACHWKPEDV ANTEPQDAQA QLANNIEG
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