| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_4452 |
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| Symbol | |
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| ID | 5211437 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | + |
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| Start bp | 5577357 |
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| End bp | 5583818 |
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| Gene Length | 6462 bp |
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| Protein Length | 2153 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640598031 |
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| Product | multi-sensor signal transduction histidine kinase |
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| Protein accession | YP_001278734 |
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| Protein GI | 148658529 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3605] Signal transduction protein containing GAF and PtsI domains
[COG5002] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.758306 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGCCA CAACTGTTAC GTCACCGCAG GTCCGCGCAT GGGAGATTCT CACGGGGTTG
GCGGAATACG GCCGATCCGG ATGCGGCAGT GCGCAGGACA TGGTTCAGCG AATCGCCGAA
CTGGGGCAGG ATCATTTACC CTGCCCGTGG GGCGTTGTTG CGGTGCAGTT CGCCGGAGCG
ATGGCGAGCG CCGGTTGGGG GATCAGTCCA GAGCGGCGGC AGCGCCTGAT CGAGCGCACG
GTTCCAATTC CTGACCAGAC AATTGAACTT CCGCTCTATC ATCGTGATGA ACTGGCTGGC
TTCCTCTGGC TCGGCATGCC CGCAGCCCAC CACGAACAAC TCGCGCCCGG TTTCCTCACA
ACGCTGCGCC ATCAGATCGA ACTCCTGATC ACGCTGCTGC ACCGCGATGC GGCAGCGCCG
GCTGCGCATC TGGACGGATC GCGCGAACGC CTGTCGTTCG ATCCAATTGA GACCCTGCGC
GCCTTCAGTC TTCACCTGAG TTCCGGTCCT GCACCCGACG ATCTTCCGGA TGTGGTGGTC
GAGTGGGCAC AGCAACTCGT GCCCTGCACT GCCGCAGCGA TCACCTGGAT TGACCCTGAA
ACGGGACGCA TCACGCAGGC GGCAGCAGTT GGCGCCGCCT TTGCGACGCC AGTGCATCCG
TTCAACGACC ACCAGACGTT GAGTGAGTGG GTCGCACAGT ATCGGCGAGC GCTCCGTCTT
GATGATATGC GCTCCGCCAC CTTCGCCGAT GGACGATCGA TTGGGGCGTA TCTGGCACTG
CCGTTGCATG CGGGCGATCA GGTCTTTGGC GTTCTCGAAC TGGTGGATGT GCAACCAGGA
CGCTTCGGCG AACAGGAGGA GCGCCTGTTG ACCATCCTCG CAGCGCAGGC GGCGCAGGCG
CTTGCCAGTG CGCAACGGTA TGCAGCGGAC GATGAACATC TTCAGACGCG CCTGGTGCAA
CTGCGGTCGC TGCAACGCAT CAGTCGAGAA TTGACATCGA CGCTCTATCT CCACAACATC
CTCGATTTTG CGCTGAAAGA GGCGCTGCGC GCCACCCGCG CCACCCATGG ATACGTTGCA
CTGCGCGGTT ATACGGTGGA GCGTGAAGCA TTCGAGATGG AGCAGTCCGA TGCGATCAGC
GTCGCCATTA CCCCGCAAAC CTATATCGTC CTGCGTTCAG TCGGCGAAAA TGGACCGGTG
CGCCTGATCG TCGCCGGAGG GTACAGCATT GAAGAGGAAG GGCGACTCAT CAATGTTGCA
CTCGATGGTG GACGAACCAT TGCAGAAGAG GTGATCGCCA GCGGCGAAGC GCGGGTCATC
GATCATTTGG CGCACGATGA TCGTCCGGCG CTGATCGGAC CGTTCCCCCT GGCAACGCTG
GCAGTGCCGA TCTACTACGA AGAGCAGGTG GTCGGTGTCA TTAATCTGCA CAGCACGCGC
GCGCATGTTT TCGACCGCGA CGCGCTCGAT TTTATGCGCG CGGTTGCCGA TCAGATTGCA
CTCGCCATCG GTAACGAAGA GCGATACCAC GAACAGCGTC GCCAGCGCGA CCTGCTTGCT
CAACGCGCCA CAACCCTCAA CGAGGTGCTG CGCATCGGTC AGGAGATGCG CGCCGACCGT
TCCCTCGACG ATGTGCTGGA ACAGATCGCA TTCAGCGTCG CCGAAACTGC GCGGTACCGC
ACAGTCGCGT TCTACCTGAT CGACAACGAT GATCGAACAA CGGCATCGCT GGTTGCTGCC
GCCGGGTTGC CGTTGACCGA GATCGAGCGT CTCCGCCTGC GTCGTTTGCC GATGTCCCTG
ATCGAGCGGT TGCTCGATCC GCAGTTTCGC GTCGGGCGAA GTTTCTTCGT GCCCGGTCGG
CGTATGCGTG AGCTGTTCGA TGAAGCCGAT CAGCGTCTGC TGCCAACCCT CGAAACCGGT
GAAGCACGCA CGCCGGATGA GTGGCAGGCG GACGATCTTC TGATCATTCC CCTCTATCGC
AGCCGGTCGC GTCTGGTCGG GATGATGGTG GTGGACGAGC CGTATGACCG TCATACTCCA
ACGCCGCGTT CGGTCGAAAC GCTCGAAATC TTCGCCGATC AGGCGTCGAT AGCCATCGAA
AATGCCATGC TCCTGCGCGA AGCCCGATCG CAGGCGGAAC AGATGGCGTC ACTCTACCGC
GCCAGTACGG CAATGGTCTC GTCGCTCGAC CTTGATGATC TGCTCGAACG GATCTATGCC
GAGATCATCG CGCACGTCGG CGTTCCGTCG TTCTGCTTCG TTGCATCGTA CAACCAGTCC
CGCGATGAAC TCCGCTTCGA GATGTTCAAG CGTGAGCGCG AGACGGCAAC GCACCTGCAT
AAACGCACTC TGCCACGGAG TGGACTCAGC GGATGGGTGA TCGAGCACGG CGAAATGCTC
TACATCAAGG ACTACCTGGA AGAGCAGGAT CGCCTGCCAG CGTCGCCGGT CAATCTGGGA
GAAGCGATCC GCTCATGGGT CGGCATCCCG TTGATGCGTC AGAACCAGCC GATCGGCGTC
CTTTCGGTGC AGAGTTTTGA GCCGCACGCT TTCAGCGAGC GCGATGTGCA GTGGTTGTCG
ACCATCGCAA ACCAGCTTGC CGTTGCGCTA TCGAACGCTC AACTCTTCGC CGAACGCGGA
CAACGCATCA ATGAACTGAA CCTCATCAAT CATATCGGGC ATATTACCAG TTCGACGCTC
GATATCGAGC GGATGTTCAC CGGAGTCTAC GAGGCGCTTG CCGGTTTCCT GCCGATCGAT
GTCTTTGCTG CGTGCCTCTA TGAAGCGGAG CGCAATATCA TCGGCAATGC GTTCATCGTC
GCCGGCAACG AGCGCTCCTA TCGCTACATC GGTCGCGCTC CATCACCGGA AAGTCTGCTC
AGGCACGTTA TCGCAGCACG GCAATCGGTG CGTCTGGAGG ATATGTCCCC GGCGTCAGTC
GAGGTCTGCC TGGACTTCAT TCATCTCATT GACCCCGGAC AAACCCCGGC ATCGTGCGTC
GGCGTGCCGC TGGTGGCGGG TGACAAGGAA GTTGTCGGGG TGCTGACATT GCAGAGTTCG
ACGCCACGCG CCTACAGCGA CCGCGAACTC GCTTTCCTGA GCACAGTCGC CGTGCAGGTG
GCGCTTGGCG TGCAGAACAT CCGTCTGTTC ACCGAAGCGC GCGATAGCGC GACTGCGCTC
CAACGCAAAG TCAGCGAACT GTCGACGCTG CTGCGCACGG CGCAGGTGCT CAGTTCGTCG
CTCAAGCCAG AGGATGTGTT GCAGTCGCTG ATGGCAATCG TCGCCGGTCA ACTACGCGTT
GATACGGTAG CGCTCTGGAA GATCGACGCC GATGGGTTCC TTACCCCGGC TGCCATGCAG
GGCATTCCGT CGGAGATGGC GCGAGTTCTG CGCGTCCCAC TGGGCAGGGG ATTAACCGGG
CGCGTCGCTG CCAGCGGACA ACCGCTGGTG GTGGCGAATG TAGATGAAGA TGGCACATCG
CTCTACCCGG ATTTCAATCG TGAGCATCAG TACACATCGT TTATGGGCGT GCCGGTTGTG
TACCGCGAGC AGACGATCGG CGTGCTCAGC GTCATGACCG TTCAGGAGCG CGAGTTCGGC
GCCGACGAAG TGGCGTTGCT TGCAGGTATC GCCGACCAGG CGGCGATTGC GCTGGAGAAC
GCGCGACTCT TCGCCGAACG CGAGCGGCGC ATCGCGGAAC TGACCACGCT GAACCGTATC
AGTCAGGCGA TCAATGTGTC GCTCAGCACC GAAGAGATCC TCGAAGCGCT CCATCGCGGC
ATGAGCGAGG TGCTCGATAC CTCGCAATCC TTCATCGCTC TGTACGACGC GAAGACACGA
CGCCTGACGT TCCCGCTGGT CTATGAACAT GGTCGCCGCG CGCCTGACCG GGAAAAAGAA
GTCATTGTGA TCGACGATCT GATGGGCGGG TTGACGCCGA CGGTCATTCT TGAACGCCGA
CCGCTGCTGC TCCGCACGCA ACAGGAAGTC GAAGCCGTCG CCCTCCTCCC CTACAACTGC
GACGATCCGC CGATCTGCTC CTGGCTTGGC GTGCCGATCA TTCAAGGCGA CGAGATCTTC
GGCGTGCTGA ATGTGCAGAG CTACGAGCCG GGCAAGTTCG ACCAGGATGC GCAGCGCTTC
CTGGTCACCG TCGCCAATCA GGCCGCGATC GCGTTGAGCA ATGTCCGTCT CTTCCAGAGT
GAACAGGAAC GCCGTCGGGT CGCCGATACG CTGCGCGAGG TTGCAAAAAT ACTGACCGGT
ACGCTGGCGC TGGATGAGAT TTTTGCGCTG ATCCTCGACC AGCTGGCGCG GGTGGTTCCC
TACGATACGG CATCGCTCAT GCTGCGCGAA GGAGATATGC TGCGGATCGT GGCTGCGCGT
GGCTTCGATG AGTCGATCCA GGAGCGCGTT GAACACCTGC AACTGCCGCT TGATGATGAT
CCGTCACTGG CGCGGGTCGT GTACACCCGC CGTCCGCTCG TCCTTGCCGA TGCCCGTCAG
GCGCCGTCTT CCAGCGTCGA TGAGGGCACC GAACATATCC GCGGCTGGAT CGGCGCACCG
CTGATCGTCG GCGACGAAGT GATCGGGGTG CTCAACGTCG ATAGTACCAT CGTCGGCGCC
TACGACGAGG AGGACGCACA GATCGCATTC GCGCTGGCAA GCCAGGCAGC CCAGGCGATC
CACAATGCGC GCCTGTTCGC CGAAGTGCAG CGTGCGACCG CCGAACTTGA GCAACGGGTC
CAGGAACGCA CGGCAGAACT CAAGCAAACC AACGACCAGC TCGCCGCCGA GCGCGACCGG
TTGCAGGCAT TGCACACCAT TACCCTGGAA TTGACTGCCA GCCTCGACCT GCAAACCACG
CTGAACCGTG CGCTGGAACT GGCTTCCAGG GCCGTTGGCG CCCGGCGCGG TTCGATCATG
CTCAAGGACC TCAAAAGCGG CACCCTCATT TGCCGCGCCG TCCTCAACAC CGATGGTTCG
GTCGAGGCAA AGCACTTCCC TATCTCCTTT GGGGACAAGA AGGGACTCTC CGATTGGGTT
ATGCGTCATA AAAAGGCGGC CTGTATCGGC GATGTGCTCC AGGACAATCG CTGGTTACAG
GAAGAAGGAC GCGCTGAAGA TGTGCGTTCG GTCATTGCCG CCCCATTGAT GGCGCAGGAA
GATCCTATCG GCGTGCTGAT TGTGACCAGC GCAGAGACCA ATTTCTTCAA GCAGGATCAG
ATGCAGTTGC TGACGACGAT CGCCAACGAG GTAGCCATTT TCATCAACAA TGCCACGCTC
TATACCATCA TCAACGAAAT CGCCACCGAG CGCAGCGATC TCTTGTTGCA GCAGCGCGAG
GAAAACAGTA AGAACCAGGC AATCCTGCAA AGCCTGGGTG AAGGCGTCAT CGTGGTTGAT
GGAGGGCGGA AGATTGTGCT CTACAACGCG GCATCCGAGC AAATCCTGGG GATACCGGCA
ACGTTCGTCG TTGATCAACC GCTGACGCGG ATCGCCGAGT ACCACAACGG CAGCACCGTC
GTCGAACGTG CAAAACGTAT CTATGAGGGC TTGCAGCAGG GATTGCAGGC GTTGACCGAG
ACGCCGAAGA ACCATAATCG AGTGCTGGAA CTTCCAGAGC CGACGCAGTC GATCATGCTG
AATTTTGCAC CCTGGGTCGG CCCACGCAAT GCAATCTACG GTAGCGTCAT CGTCTTGCAC
GATATTACCC GCGAAGTCGA AGCCGACCGC GCCAAGCGCG ACTTTATCTC CAGCGTTTCT
CATGAATTGC GCACACCGCT CACCTCGATC AAGGGGTACG TCGATCTGAT GCTGCTCGGC
GCCAACGGAC CGCTCAACGA AGAGCAGAAG AAGTCGCTGG GCGTTGTCAA GAACAATGCC
AACCGGTTGA TGGACCTGAT CAACGATATT CTGGAGATTG GTCGGATCGA TAGCGATAAA
ATCCAGCTCA CCTTCGAGAA GGTGGTCATC GGTGATATTT TCCGGGATGT GGAACAAACG
TTGCGCGCCG AGATCAAACG GAAACGCCTG TCGTTCACCT TCGATGTTGC CGCAGACACG
CCGCCTGTTT TCGCAGACAA GCGCCGTCTG ACGCAGATCG TGCTGAACCT GGCGTCGAAT
GCGGTGAAAT ACACCTATCC CGAAGGGATC GTCAAACTGC GCGCCGGGTT GAACCCGGCA
GGTCTGCTGC AGGTCGATGT CATTGATAAT GGCGTCGGCA TCTCGCCAGA GCAGCAGCAG
CATTTGTTCC GCCGTTTCTA CCGCGCCGAC AACCCGCTGC GCGATGAAGC CGGCGGCACG
GGATTGGGGC TGTCGATCGC CAAATCATTC GTCGAACTGC ACGGCGGTCA GATGTGGGTC
GAAAGCGATC TCGGCAAAGG AAGCACATTC AGTTTCATCA TCCCGCTGAG ACCGTCCACA
TCAGAAGCAT CATCGGAGAT GCCAGAGCAG AGTTGGTCAT GA
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| Protein sequence | MDATTVTSPQ VRAWEILTGL AEYGRSGCGS AQDMVQRIAE LGQDHLPCPW GVVAVQFAGA
MASAGWGISP ERRQRLIERT VPIPDQTIEL PLYHRDELAG FLWLGMPAAH HEQLAPGFLT
TLRHQIELLI TLLHRDAAAP AAHLDGSRER LSFDPIETLR AFSLHLSSGP APDDLPDVVV
EWAQQLVPCT AAAITWIDPE TGRITQAAAV GAAFATPVHP FNDHQTLSEW VAQYRRALRL
DDMRSATFAD GRSIGAYLAL PLHAGDQVFG VLELVDVQPG RFGEQEERLL TILAAQAAQA
LASAQRYAAD DEHLQTRLVQ LRSLQRISRE LTSTLYLHNI LDFALKEALR ATRATHGYVA
LRGYTVEREA FEMEQSDAIS VAITPQTYIV LRSVGENGPV RLIVAGGYSI EEEGRLINVA
LDGGRTIAEE VIASGEARVI DHLAHDDRPA LIGPFPLATL AVPIYYEEQV VGVINLHSTR
AHVFDRDALD FMRAVADQIA LAIGNEERYH EQRRQRDLLA QRATTLNEVL RIGQEMRADR
SLDDVLEQIA FSVAETARYR TVAFYLIDND DRTTASLVAA AGLPLTEIER LRLRRLPMSL
IERLLDPQFR VGRSFFVPGR RMRELFDEAD QRLLPTLETG EARTPDEWQA DDLLIIPLYR
SRSRLVGMMV VDEPYDRHTP TPRSVETLEI FADQASIAIE NAMLLREARS QAEQMASLYR
ASTAMVSSLD LDDLLERIYA EIIAHVGVPS FCFVASYNQS RDELRFEMFK RERETATHLH
KRTLPRSGLS GWVIEHGEML YIKDYLEEQD RLPASPVNLG EAIRSWVGIP LMRQNQPIGV
LSVQSFEPHA FSERDVQWLS TIANQLAVAL SNAQLFAERG QRINELNLIN HIGHITSSTL
DIERMFTGVY EALAGFLPID VFAACLYEAE RNIIGNAFIV AGNERSYRYI GRAPSPESLL
RHVIAARQSV RLEDMSPASV EVCLDFIHLI DPGQTPASCV GVPLVAGDKE VVGVLTLQSS
TPRAYSDREL AFLSTVAVQV ALGVQNIRLF TEARDSATAL QRKVSELSTL LRTAQVLSSS
LKPEDVLQSL MAIVAGQLRV DTVALWKIDA DGFLTPAAMQ GIPSEMARVL RVPLGRGLTG
RVAASGQPLV VANVDEDGTS LYPDFNREHQ YTSFMGVPVV YREQTIGVLS VMTVQEREFG
ADEVALLAGI ADQAAIALEN ARLFAERERR IAELTTLNRI SQAINVSLST EEILEALHRG
MSEVLDTSQS FIALYDAKTR RLTFPLVYEH GRRAPDREKE VIVIDDLMGG LTPTVILERR
PLLLRTQQEV EAVALLPYNC DDPPICSWLG VPIIQGDEIF GVLNVQSYEP GKFDQDAQRF
LVTVANQAAI ALSNVRLFQS EQERRRVADT LREVAKILTG TLALDEIFAL ILDQLARVVP
YDTASLMLRE GDMLRIVAAR GFDESIQERV EHLQLPLDDD PSLARVVYTR RPLVLADARQ
APSSSVDEGT EHIRGWIGAP LIVGDEVIGV LNVDSTIVGA YDEEDAQIAF ALASQAAQAI
HNARLFAEVQ RATAELEQRV QERTAELKQT NDQLAAERDR LQALHTITLE LTASLDLQTT
LNRALELASR AVGARRGSIM LKDLKSGTLI CRAVLNTDGS VEAKHFPISF GDKKGLSDWV
MRHKKAACIG DVLQDNRWLQ EEGRAEDVRS VIAAPLMAQE DPIGVLIVTS AETNFFKQDQ
MQLLTTIANE VAIFINNATL YTIINEIATE RSDLLLQQRE ENSKNQAILQ SLGEGVIVVD
GGRKIVLYNA ASEQILGIPA TFVVDQPLTR IAEYHNGSTV VERAKRIYEG LQQGLQALTE
TPKNHNRVLE LPEPTQSIML NFAPWVGPRN AIYGSVIVLH DITREVEADR AKRDFISSVS
HELRTPLTSI KGYVDLMLLG ANGPLNEEQK KSLGVVKNNA NRLMDLINDI LEIGRIDSDK
IQLTFEKVVI GDIFRDVEQT LRAEIKRKRL SFTFDVAADT PPVFADKRRL TQIVLNLASN
AVKYTYPEGI VKLRAGLNPA GLLQVDVIDN GVGISPEQQQ HLFRRFYRAD NPLRDEAGGT
GLGLSIAKSF VELHGGQMWV ESDLGKGSTF SFIIPLRPST SEASSEMPEQ SWS
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