| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_4401 |
|---|
| Symbol | |
|---|
| ID | 5211386 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | + |
|---|
| Start bp | 5518426 |
|---|
| End bp | 5519670 |
|---|
| Gene Length | 1245 bp |
|---|
| Protein Length | 414 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640597981 |
|---|
| Product | major facilitator transporter |
|---|
| Protein accession | YP_001278684 |
|---|
| Protein GI | 148658479 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.868968 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAGACG CACGGAACCC GGTGCTCCTT CCACCTGCAC AGCGACGACG CGGCGCAGTG
GTGATGCTGG TGATTACTTT CCTCATGTGG GGCGGATTCT TCATGGTTAT CCCCCTTATA
TCGATACGCT ACGTTGATGA CCTGGGATGG TCGGCGGGAG CGATAGGACT GGTGCTGGCG
ATCCGTCAGT TAACGCAGCA GGGATTGACC GTTTTCGGCG GCGCGCTGGC AGACCGGTTC
GGCGCGAAGG GATTGATCGT CGTCGGCATG TTCATTCGTG CGGTCAGTTT CAGTGCGCTG
GCGCTTGCGT CAACCTATCC GCTGCTGATG ATCAGCGCGC TCATGGCGGC GATTGGCGGC
GCATTGTTCG ATTCGCCATC GTCGGCGGCG ATGGTTGCGC TTACGCGACC GGAAGAGCGC
AACCGGTACT TTGCAGTGCT GGGAGTCGTG CGCAACCTGG GGATGTCCCT CGGTCCGCTG
GCGGGCGCAG TGTTGCTACG GATCGATTTT GCCTTTGTTG CGCTTGCGGC GGCTGGCTGT
TTCTTCATCG CTGCGGCTGT GACGTTGCTG CTCTTGCCGC CGGTGCAGGT TGCAACCGAA
CGCGGTGAAC TGCTGGCGGG CATTCTGCTT GCGCTGCGCG ACCGGCGCTT CATGGCGTTC
AATGTGCTGC TGATGGGATA CTGGTTCATG TGGGTGCAGA TGACCATCTC GCTTCCCCTG
GCGGCGCGCA CGCTTGCCGG GACTGCTGAT GCCGTGAGCT GGCTCTACGC CCTGAATGCA
GGAATGGGCA TCGTGTTGCA GTATCCGGTG GTGCGCATCG CCGAACGCTG GTTGCGCCCG
CTCCCGGTGT TGCTGATCGG CATTGCGCTG ATGGCATTGG GGTTGGGCAG CGTGGCGCTT
GCCAGTACGA CCGGGCTGCT GCTGGCGAGT GTGGCGATCT TTTCATTTGG CGCCTTGCTG
GCTGCGCCGG GACAACAGAC GGTCGCTGCC GAACTGGCGA ATCCGACGGC GCTTGGCTCG
TACTTCGGCG TCAGCGCACT GGCGCTGGCG CTGGGCGGCG GGATCGGGAA TTATGCCGGG
GGGGCGTTGT ACAGCCTGGG ATACCACATT GGCGCACCAG CACTCCCCTG GCTGGTCTGT
CTGGTGGTCG GCATCGGCTC GGCAATCGGT CTGGCGCTGC TCGATCGCCA CCTTACCCGT
CATCCGGCGA ATGTTGCCGA TGCAGCCGTG TCCTATCGCG ACTGA
|
|---|
| Protein sequence | MTDARNPVLL PPAQRRRGAV VMLVITFLMW GGFFMVIPLI SIRYVDDLGW SAGAIGLVLA
IRQLTQQGLT VFGGALADRF GAKGLIVVGM FIRAVSFSAL ALASTYPLLM ISALMAAIGG
ALFDSPSSAA MVALTRPEER NRYFAVLGVV RNLGMSLGPL AGAVLLRIDF AFVALAAAGC
FFIAAAVTLL LLPPVQVATE RGELLAGILL ALRDRRFMAF NVLLMGYWFM WVQMTISLPL
AARTLAGTAD AVSWLYALNA GMGIVLQYPV VRIAERWLRP LPVLLIGIAL MALGLGSVAL
ASTTGLLLAS VAIFSFGALL AAPGQQTVAA ELANPTALGS YFGVSALALA LGGGIGNYAG
GALYSLGYHI GAPALPWLVC LVVGIGSAIG LALLDRHLTR HPANVADAAV SYRD
|
|---|
| |