| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_4317 |
|---|
| Symbol | |
|---|
| ID | 5211301 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 5419021 |
|---|
| End bp | 5421012 |
|---|
| Gene Length | 1992 bp |
|---|
| Protein Length | 663 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 640597902 |
|---|
| Product | amidohydrolase |
|---|
| Protein accession | YP_001278606 |
|---|
| Protein GI | 148658401 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0402] Cytosine deaminase and related metal-dependent hydrolases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.866715 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGACTG TCGATATTCT GCTTGTTCAT GGCGCGGTGG TGACCATGGA CTCCGCGTGG
CGCATCTTTC TCGACGGGGC AGTCGCCGTG CGCGGCAACG AGATTGTCGC CGTCGGTCCT
TCCGCCGACC TCACGGCGCG GTTCAGCGCA CGCGAAACCG TCGATTGCCG GGGATGCGCG
ATCATCCCCG GTCTGATCAA TGCCCACGCA CACGTGCCGA TGAGCCTGTT GCGCGGTCTG
GTCGCCGATC AACAACTCGA TGTCTGGCTC TTCGGGTATA TGTTCCCGGT CGAGAGCCGC
TTTGTCGATC CGGAGTTTGT TTTCACCGGT ACGCAACTCT CGTGCGCCGA GATGATCCGC
GGCGGGACGA CGACCTTCGT CGATATGTAC TATTTCGAAG AAGAGGTCGC CCGCGCCGCC
GACCTTGCCG GTATGCGCGC GATCTGCGGG CAGACGGTGA TGCGCCTGCC CACCCCCGAT
GCGGCGTCCT TCGATGAGGG GTTGGAGCGC GCGCGCATGT TCATCGAACA GTGGCACGGG
CATGAGCGGA TCATTCCAAC CATTGCGCCC CATGCCCCCT ATACCTGCAC CGATACGATC
TACCGTGAAG CGGCTGCACT CTGCCGTCGC TACGGCGTGC CGCTGGTCAC CCACCTCTCG
GAAACCGAAC GCGAGGTCGA GGAGAGTCGT CAGGAGCGCG AGGTGACCCC TATTCGCTAC
GCCAGACGGG TTGGCGCGTT TGATGGCAAG TGCATCGCGG CGCACTGCGT CCACGCAACC
GAAGATGATA TCCGGTTGCT GCGCGAGGGA CACGTCGGGG TCGTCCCCTG CCCATCATCG
AACCTGAAAC TTGCCAGCGG CATCGCTCCC ATCCGACGCT TCATCGAAGC CGGTCTGCGC
GTGGGTCTGG GCACCGATGG ACCGGCATCG AACGATGATC AGGATATGTT TACCGAGGTT
CATCTGGCTG CCCTGCTGCC AAAAGGGGTG AGCGGCGATC CGACGGCAGT GCCGGCACGC
GATGCGCTGG CGCTGGCAAC ATCATCTGGC GCGCGGGCGA TCCATCTCGA CCACCTGATC
GGGTCGCTCG AAGCAGGGAA ACGCGCCGAC ATCGCAGTTG TCGCGCTGGG GCGGCTCCAT
TCCGCGCCGC GCTATCACTA CGCGCCCGAC GCGCTCTATT CACATCTGGT CTACGGCGCG
CGCTCGGCGG ATGTGCGCGA CGTTTTGGTG GATGGGCGCT TCCTTCTGCG CAATCAGACG
CTGCTGACGA TCGATGAGGA AGATGTGTTG CGCCGCGCGC AGATCATCGC CGACCGGATC
GATGTGTTCC TGGCTGCGCG GGAAGACAAC CTGCTCGATA AGATCCTGGC AATCGGCGGC
GTTCAGCAAT CCGAGATTTT CGAGGTGCAG GCGAAGGCGC CAATCGACCC GCAAACCGCC
GAACGTGTCA TTCAGTCGCT CTACGAACCC GGCATTACGA TTACCAAGGC GAGTGAACGC
ACCCAGTACG ATACCTACTT CCTGTGGGAC GACGAAGAGC GTGGGCGTAT CCGCATTCGT
GAAGATCACC GTACCGATCC AGGCGCGCGC GCCGAGCCAA AGTACACCAT CACCCTGATG
GCGCCCGCCC TGCGTGGCGA ATACCAGTCG GCGATCCTGT TCGGTCGCGC CCGCTACACC
GCCCGCGCCG ACCGTACCCT GCGCTTCTAC CGCGAGTACT TCCAGCCAGA TCGGATCGTC
GAGATCGAAA AGCGCCGCCG CCGCTGGCGT ATTCAGTACC GCGACGCCGA TTTTGCAGTC
AATCTCGACA CCCTGATCGG GCACGCACGC CCCGGACCGT ACCTGGAAAT CAAGAGTCGC
ACCTGGAGTC GGAAGGACGC CGAACACAAG GTGGAACTCA TCGGTGAACT GCTGCGACGC
TTCGGCGTTC CCGAAGATGC GCTGATCAGG CAGGAGTACG TTGAACTCGA ACTGGCGAGT
GTTGAACGGT GA
|
|---|
| Protein sequence | METVDILLVH GAVVTMDSAW RIFLDGAVAV RGNEIVAVGP SADLTARFSA RETVDCRGCA
IIPGLINAHA HVPMSLLRGL VADQQLDVWL FGYMFPVESR FVDPEFVFTG TQLSCAEMIR
GGTTTFVDMY YFEEEVARAA DLAGMRAICG QTVMRLPTPD AASFDEGLER ARMFIEQWHG
HERIIPTIAP HAPYTCTDTI YREAAALCRR YGVPLVTHLS ETEREVEESR QEREVTPIRY
ARRVGAFDGK CIAAHCVHAT EDDIRLLREG HVGVVPCPSS NLKLASGIAP IRRFIEAGLR
VGLGTDGPAS NDDQDMFTEV HLAALLPKGV SGDPTAVPAR DALALATSSG ARAIHLDHLI
GSLEAGKRAD IAVVALGRLH SAPRYHYAPD ALYSHLVYGA RSADVRDVLV DGRFLLRNQT
LLTIDEEDVL RRAQIIADRI DVFLAAREDN LLDKILAIGG VQQSEIFEVQ AKAPIDPQTA
ERVIQSLYEP GITITKASER TQYDTYFLWD DEERGRIRIR EDHRTDPGAR AEPKYTITLM
APALRGEYQS AILFGRARYT ARADRTLRFY REYFQPDRIV EIEKRRRRWR IQYRDADFAV
NLDTLIGHAR PGPYLEIKSR TWSRKDAEHK VELIGELLRR FGVPEDALIR QEYVELELAS
VER
|
|---|
| |