| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_4303 |
|---|
| Symbol | |
|---|
| ID | 5211287 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 5403315 |
|---|
| End bp | 5406848 |
|---|
| Gene Length | 3534 bp |
|---|
| Protein Length | 1177 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640597889 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_001278593 |
|---|
| Protein GI | 148658388 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.763591 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.628382 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTATCC AACGACGTGA AGAGAAGCTC AATGGCATGC CGATTTCCGA CACCTCGATC
CGTCAGCCGG TGTTTGTCAC CATGCTTATG CTGCTGACAA TCGTGTTCGG CATTCTGGCA
TTCCGTTCGT TGCCGGTCAA TCTCCTTCCC GATTTCGAGG TGCCGGTGAT TGCAGTCACC
GTTCCCTACC CTGGCGCCGG TCCGGAAAGC GTCGCCGATC AGGTGGCCAA ACCGATTGAA
GACGCAGTCA ACACCATCGA GGGAATCGAG AACATTACCA CCAATGCCAG TGAAGGAGTG
GCATTGATCT TACTTGAATT CAAAGAGGGT ACCGACGTCA ACCGCGCCGA GCAGGATGTG
CGCGAAAAGG TGAATGCCAT CCGCCCAACG CTGCCACGCG ATGTGCGCGA CCCGATCTTC
CAGAAGTTCG ACCCGAACGC GGTGCCGATC GTTTCATTCG CCATCGCCAG TACGCAGAAC
CTGTCGCCGC TTGAGGTGCG CCGCATTGTG GATAACGACA TTGCACCGAT CATCCAGCGC
GCCGAAGGCG TCGGCTCGGT GCAGGTCTCC GGCGGTCTGC AACGGCAGAT CAATGTATTG
ATGGATCTGG AGAAACTGCG CGCCTACGGC ATTCTTCCGG TTCAGATCAC GCGCTCGTTG
CAGCAGGCGA ATGTCAATCT CGGGCTTGGC ACGATCAATG CCGGGGCGCA GGAGATCAAT
CTGCGTGCGC CTTCGCTGTT GCAAACGCCA GACGATATTG CCAGGATTCA GATCACCGGC
ACGCCATACC GCATCGGTGA TGTGGCCACC ATCGAAGACG GCGTGGCGGA GAAGAAGAGT
TTTACCCGTC TCAACGGAGT CGAAGCCATT ATTATCGACG TTCGCAAGCA GAGCGGCGCC
AATACCGTCG CCGTGGCCGA TAATGCGAAG GCGGCGCTTG AGCGCGCACT CGGCGCTCGC
AGCGATCTGA CCTATATTGT GCCGCGCGAC GCCTCTGAAG CTGTGCGCCA GTCGACTATC
AGTTCGCTCG AAGAACTGAT CTATGCATCG GTTGCGGCAC TGCTGGTGGT GATGATGTTC
TTCAGCGGCG TGCGCAACAT GCTCGTCACC GCTGCCGCTC CTGCCGCAAT TGCGCTCGTT
GGTCTCGTCA TCCTGCCTGC CATTGGCATC CCGGTCGATA AGGTGCTTGT TCTGGCAATT
GCTATCGGTC TGCTGGTGGT GCTGACCTTC ATCCGCGACC GTAACACGCT GGTGACGATG
GCGGGTCTGC CGATCATTTT GATGGGCACC TTTGCGCTGA TGCCGCTTTT CGGGTTGTCG
ATCAACCTGA TCACGCTGCT GGCGCTGGCG CTCTGCGTCG GGTTGGTGAT CGACGACGCG
ATTGTGGTGC GCGAGAATAT CTTCCGCCAC ACGCAACGCG GTGAGACGCC GCGCGTCGCC
GCCAGCAAAG GCACGGCGGA AGTGGCGCTT TCGGTTGTGG CGATGACCCT GACAGTTGTC
GCCGTGTTCG TGCCGGTGAC GTTTACATCG GGCACCACCG GCATCATCTT CAAGTCGTTC
GGTATCACAA TTGCAGTTGC TATTCTGCTC TCGCTGGTGG AAGCGTTCAT GTTCGCGCCG
ATGCTTTCCG CCAATCTCTT CCGCCGTCAA AAGGTGCAGC CGCACCCGCA CGATGAAGCC
CATTCACACA CCGGCGATGT CGGTCGCGCG GCGCGTCATC TGCGCGGTAT CGACCCGAAC
CAGGCGGATG CCGGTCTGCT CCACGAAGCG GAAGAAGATC CCGGTCCGCT GGGACGCTTC
TACGAACGCA TCCTTTCCTG GAGCCTGAGC AGCCTGCGCA ATCGCCTGAT CGTCATCGCT
ACCGCCGTTA TCGTGCTGGT GCTGAGTGTG GTGGTTGCCA GCGGGTTGAA GTTCAGTTTC
TTCCCGCAAC AGGATGCAGG TGAGTTCCTG GTCGGGTTCG AGTTGCCCCC CGGCACGGCG
CTTGTCGAGA CTGACCGCCT GGCGCGTCAG GCGGAGGAAG TTCTGCTCGC CGATCCCGAT
GTCGAGTCGG TCATCAGCAC GGTTGGCTTC TCCGGCGCGC CGGAGCGCGC TGAGTTCTTC
GTGCGCCTGA AGGACGAGGT TCCCACCCGC GCGGCAGAAG AGCGCCTGCG CCCGCAACTG
GCGTTCCTGC CGAACCTGAC CTTTGGCCTG CCTTCGATTG GTGTGCCGAC CAGCACCGGC
GTCACCGGGC GGCAGTTGCA GTTGAGCCTG CAAACGACCG AGCCGGTACA GAACCTGGCG
CCGCTGATCG AGCAGATTAA GGCGGAGATG GCAGCCATTC CCGGCGTTGT CGATATTGAC
ACCAGCTACC GCCCCGGTAA GCCGGAACTG CGCTTCGTCG CCGATCCGGA GCGCATCGGC
GATCTGGGCA TCACCAATGA TGAGATCGCC GCGTCGGTGC GTGCGCTGGT GAATGGCGAC
CGCGCCACTG TCCTGCGGCA GGCGGGGCAG GATGTCGATA TTGTGGTACG CCTCCGCCCC
GAAGACCGCG CCACACCGGC GGCGCTCCAG AACATCGCCA TTCCGACCCG CAGCGGCGCG
GTTCCGCTGA CGTCGCTCGG CACGATCGAA CTGGCGTCAA CGCCGCAGAC GATCCGACGC
TACAACAAAC TCAACCAGGT GATCATTGGT GCAAACCTCC AGGGACGCAA CCTCGGCGAG
GTGCAGGCTG AACTCCAGCA GCGTCTCGAT GCAAAAGGTC TCATTCCGCC GACCGTGTTC
GCTGAGTTTA CCGGTCTGGC GCAACAGCAG ACGGAAGGGT TCGAGTCGCT CCTGCTGGCG
ATGCTTCTGT CGGTGATCTT CGTCTATATG GTGCTGGCGT CGCAGTTTGG GTCATTTACC
CAACCGCTGG TGATCATGGT GGCGATGCCG TTCAGTTTCA TCGGCGCCTT CCTGGCGCTG
CGCCTGATCA ACATCGATCT GGACATCACC GGCATGATCG GTCTGATCAT GCTGCTCGGT
CTGGTGGTGA AGAACTCGAT CCTGCTGGTT GACTTCACCA ACCGCCTGCG GCGCGCCGGT
CTCGACAAGC ACGCGGCGCT CGAACTGGCT GGCGCTATCC GTCTTCGTCC GATCCTGATG
ACCACGCTAT CGCTGGTGGC GGGCGCTTTG CCGGTGGCTA TGGGCATTCA CCTGGTCGGA
ACCGGCGAGG GCGGCGAGTT CCGCAAAGGG CTAGCGACCG TGCTGATCGG CGGGTTGATG
ACCTCGATGC TACTGACGCT CCTGGTTGTG CCGACAGCGT ACAGCCTGAT GGAGTCGTTC
ACCGAACGGG TATCGACCTG GTTCCGCCGC CGCTTCGACC CCGAAGGATG GGCGGAAGAA
CAGGCGGCGC TTGCGGCAGA AAGCATGGTT CCTGTCAACG GCAGCGCTCC AGCGGTCGCG
CTGGCTGTTC CGAATGGTGG ATCGGTCATT GCGCCGCCAA ACCACGCCGC TGCTGGCGAG
CCGAACGGAC ACGAACCGGT GAGTTCGCCG CCGGTCCGAG CCGAAGAACA ATAG
|
|---|
| Protein sequence | MAIQRREEKL NGMPISDTSI RQPVFVTMLM LLTIVFGILA FRSLPVNLLP DFEVPVIAVT
VPYPGAGPES VADQVAKPIE DAVNTIEGIE NITTNASEGV ALILLEFKEG TDVNRAEQDV
REKVNAIRPT LPRDVRDPIF QKFDPNAVPI VSFAIASTQN LSPLEVRRIV DNDIAPIIQR
AEGVGSVQVS GGLQRQINVL MDLEKLRAYG ILPVQITRSL QQANVNLGLG TINAGAQEIN
LRAPSLLQTP DDIARIQITG TPYRIGDVAT IEDGVAEKKS FTRLNGVEAI IIDVRKQSGA
NTVAVADNAK AALERALGAR SDLTYIVPRD ASEAVRQSTI SSLEELIYAS VAALLVVMMF
FSGVRNMLVT AAAPAAIALV GLVILPAIGI PVDKVLVLAI AIGLLVVLTF IRDRNTLVTM
AGLPIILMGT FALMPLFGLS INLITLLALA LCVGLVIDDA IVVRENIFRH TQRGETPRVA
ASKGTAEVAL SVVAMTLTVV AVFVPVTFTS GTTGIIFKSF GITIAVAILL SLVEAFMFAP
MLSANLFRRQ KVQPHPHDEA HSHTGDVGRA ARHLRGIDPN QADAGLLHEA EEDPGPLGRF
YERILSWSLS SLRNRLIVIA TAVIVLVLSV VVASGLKFSF FPQQDAGEFL VGFELPPGTA
LVETDRLARQ AEEVLLADPD VESVISTVGF SGAPERAEFF VRLKDEVPTR AAEERLRPQL
AFLPNLTFGL PSIGVPTSTG VTGRQLQLSL QTTEPVQNLA PLIEQIKAEM AAIPGVVDID
TSYRPGKPEL RFVADPERIG DLGITNDEIA ASVRALVNGD RATVLRQAGQ DVDIVVRLRP
EDRATPAALQ NIAIPTRSGA VPLTSLGTIE LASTPQTIRR YNKLNQVIIG ANLQGRNLGE
VQAELQQRLD AKGLIPPTVF AEFTGLAQQQ TEGFESLLLA MLLSVIFVYM VLASQFGSFT
QPLVIMVAMP FSFIGAFLAL RLINIDLDIT GMIGLIMLLG LVVKNSILLV DFTNRLRRAG
LDKHAALELA GAIRLRPILM TTLSLVAGAL PVAMGIHLVG TGEGGEFRKG LATVLIGGLM
TSMLLTLLVV PTAYSLMESF TERVSTWFRR RFDPEGWAEE QAALAAESMV PVNGSAPAVA
LAVPNGGSVI APPNHAAAGE PNGHEPVSSP PVRAEEQ
|
|---|
| |