| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_4287 |
|---|
| Symbol | |
|---|
| ID | 5211271 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 5374299 |
|---|
| End bp | 5375480 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 640597874 |
|---|
| Product | RNA-binding S1 domain-containing protein |
|---|
| Protein accession | YP_001278578 |
|---|
| Protein GI | 148658373 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000310337 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0146408 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCAG TACCCGACAA TGCCGTCCAG GAAACAGAAG ATTTCGATTG GACGCAGATG
CTCGACGACT ACGATTACGC GCGTCCGCAG CGCGGCGAGG TGCGCGAAGG GGTCGTCATG
AAGATCGAAG AAAGCGGTAT TCTGGTTTCA ATTGGCACCA AACGCGAAGG CATCATCCCA
ATCGCCGATG TGCGCGCTAC CGGTGATGAG GTGCTGAGCA ATCTGAAAGT GGGCGACCGG
ATCCAGGTGT ATGTGCAGGA CCCGGAAAAT CGCCAGGGCG ACCTGGTGCT GTCGCTGACG
ATGGTACAGG TCGCGCGCGA TTGGGAAGAA GCAGCCCGCC TGAGCGCCGA GGGCGGCATT
GTGCAGGGCC AGGTAATTGG CTACAACAAG GGTGGCTTGC TGGTGCAGTT CAATCGCATT
CGCGGGTTCG TGCCGGCTTC GCAGGTGGCG CAACTCCACG GGCGTACTGC CGCTGAGGAG
CGGCAGCAGG CGTTGCAGCG CATGGTCGGG CAAACGATCC CGCTCAAGGT GATCGAAGTC
GACCGTGACC GTAACCGACT GGTGCTTTCA GAACGCAGCG CAACCCAGGA GTGGCGCAAG
GCGCAGAAGC AGCGTTTGCT GACCGAACTT CAGCCTGGCG ATATTCTGAC CGGTCGCGTC
AATCAATTGA CGAACTTCGG CGCGTTTATC GACCTGGGGG GCGCCGATGG TCTGGCGCAT
ATTTCTGAAC TCTCCTGGCA GCGCGTCAAC CATCCGCGCG AGGTGCTGTC GCCAGGTCAG
GAAGTGCGGG TGATGGTCGT GGAGATCGAT GCAGAACGCG AGCGGATCGG TCTCAGCCTG
CGCCGCCTCC AGCCCAATCC CTGGGATACG ATTGACCAGC GCTATTCGCT CGGTCAACTG
GTCAGCGGTC CGGTGACGAA TGTTGCACCG TTTGGCGCAT TTGTGCAGAT TGAAGAGGCG
GTCGAGGGAT TGATCCACGC GAGCGAGCTC GACGCCGATC CACAGGCGCA ACCCCGCGAT
CTGTTGCAGC CGGGTCAGAT CATTACGGCG CGCATTATCA GCCTCGACAA GCAGCGCCAG
CGCATGGGGC TGAGCCTGCG TCACAACGGC GCCGATGAGT CGGGGGCAAC CGAAACGCCC
GAAACGCCTG CGCCGGTCGA GGAAACCAGC GTCGAGAACT GA
|
|---|
| Protein sequence | MSAVPDNAVQ ETEDFDWTQM LDDYDYARPQ RGEVREGVVM KIEESGILVS IGTKREGIIP
IADVRATGDE VLSNLKVGDR IQVYVQDPEN RQGDLVLSLT MVQVARDWEE AARLSAEGGI
VQGQVIGYNK GGLLVQFNRI RGFVPASQVA QLHGRTAAEE RQQALQRMVG QTIPLKVIEV
DRDRNRLVLS ERSATQEWRK AQKQRLLTEL QPGDILTGRV NQLTNFGAFI DLGGADGLAH
ISELSWQRVN HPREVLSPGQ EVRVMVVEID AERERIGLSL RRLQPNPWDT IDQRYSLGQL
VSGPVTNVAP FGAFVQIEEA VEGLIHASEL DADPQAQPRD LLQPGQIITA RIISLDKQRQ
RMGLSLRHNG ADESGATETP ETPAPVEETS VEN
|
|---|
| |