| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_4282 |
|---|
| Symbol | |
|---|
| ID | 5211266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 5368581 |
|---|
| End bp | 5369708 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 640597869 |
|---|
| Product | peptidase C60, sortase A and B |
|---|
| Protein accession | YP_001278573 |
|---|
| Protein GI | 148658368 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
|---|
| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0813218 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCGCAA CACTTTCACG CTTCCTGATC GCCACAGCAA TCTGCGTGTG GCTGGCGGCG
CCGCATGGTG CGTTTGCACA GCGCGGCGAG CGTTGCTTCG CTGAGACGGG GTACTGCATC
AGTGGTCGCA TCCGCGAGTT CTGGGAACAG AACGGCGGGC TGCGCGTCTT CGGGTATCCG
ATCACACCGC TGCAAAGTGA AACCATTGAA GGGCGCTCGC TTCAGGTGCA GTGGTTCGAA
CGCGCCCGGC TCGAACTGCA TCCGACGAAT CAGCGACCCT ACGATGTGCA GCTGGGGCGA
CTCGGCGCGG AACTGCTGGC GCGCGGCGAT CGCGGCGGAA CGCCGGTCAA TGTCGCCACG
TCGGGTGAGT GTCGCCTCTT CCCGCAGACC GGCATCAGCG CCTGTGGACC GATTCTGGCG
GCATGGCGCT CCGCCGGTCT GCAACTCGAC AGTCAACCTG GCGTGAGCGA GGCGGAGAGT
CTGGCGCTCT TCGGCGTGCC GTTGACCGAA GCGCGCCTGG AGACGTTCGC CGATGGAAAG
ACCTACCTGG TGCAGTGGTT CGAACGTGGA CGATTCGAGG TGCATCCCGA CAATCCCCCG
CCCGCAAACG TGCTACTTGG ATTGCTCGGA CGCGAGTATG GTCCGGTGGC GCGTGCGCCT
GAAGCGACAA CTGCGGTGCG ATCAGCGCCA GCGCGCATCG TCGCCCGCGA GATCGGGATG
GACGCCCGGA TTGTCCCGGT TGGACTGGAT GCGCAGGGGA TGCCCGTTGT GCCGGATCAC
GATGTGGGCT GGTATAACCG CAGCGCCTTG CCTGGTCAGG GTGAGAATGT GGTGCTGTGG
GGACACGTGC TGCGTTTCAG CTACGCGCCG CGCATCCCCG CTCCCTTCGC CCGGCTGAAA
GACCTGCGCA CCGGCGCACG CCTGACGGTG TACGACTCGA ACGGAACCGC CTTCGATTAT
GTGGTAACGC GCCAGGTCTG GGTGCGCCCG ACGGAAGTGG AATGGATGCT GCCGCAGGGG
AGCGAACGCC TCACCCTCAT TTCGTGCATT GGTGATAAAG TAATCGTTGG GCGCGAAGTG
ATCGATATGA GTCATCGCCT GATCACGATT GCGGAACCGG CGCGCTGA
|
|---|
| Protein sequence | MPATLSRFLI ATAICVWLAA PHGAFAQRGE RCFAETGYCI SGRIREFWEQ NGGLRVFGYP
ITPLQSETIE GRSLQVQWFE RARLELHPTN QRPYDVQLGR LGAELLARGD RGGTPVNVAT
SGECRLFPQT GISACGPILA AWRSAGLQLD SQPGVSEAES LALFGVPLTE ARLETFADGK
TYLVQWFERG RFEVHPDNPP PANVLLGLLG REYGPVARAP EATTAVRSAP ARIVAREIGM
DARIVPVGLD AQGMPVVPDH DVGWYNRSAL PGQGENVVLW GHVLRFSYAP RIPAPFARLK
DLRTGARLTV YDSNGTAFDY VVTRQVWVRP TEVEWMLPQG SERLTLISCI GDKVIVGREV
IDMSHRLITI AEPAR
|
|---|
| |