| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_4164 |
|---|
| Symbol | |
|---|
| ID | 5211148 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 5214021 |
|---|
| End bp | 5215307 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 640597753 |
|---|
| Product | isocitrate lyase |
|---|
| Protein accession | YP_001278458 |
|---|
| Protein GI | 148658253 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG2224] Isocitrate lyase |
|---|
| TIGRFAM ID | [TIGR01346] isocitrate lyase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.652432 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCTG TCAATCGTGA CCAGGAGATC GCTGAGCTGG AACGGCGCTG GGCGACCGAC
CCGCGCTGGC AGGGCATCCG ACGCGACTAC AGCGCCGCCG ATGTGGTGCG GTTGCGCGGC
ACCCTCAAGA TCGAGTACAC GCTGGCGAAT GTGGGCGCCC GGCGGTTGTG GGATCTGTTG
CAGACCGAAC CGTATGTGGC GACGTTTGGC GCACTGACCG GCGCACAGGC AACCCAGATG
GTGCGCGCCG GGATCAAGGC GATCTATATG AGCGGCTGGC AGGTGGCTGC CGACGCGAAC
CTGGCGGGAC AGACCTACCC CGACCAGAGC CTCTATCCGT CGAACAGCGT CCCGGCGCTG
GTGCGTCGGA TCAATAACGC GCTCATGCGC GCCGACCAGA TCCACGCATC GGAAGGGCAT
AACGATATTT ACTGGTATGC GCCGATTGTC GCTGATGCCG AGGCAGGGTT TGGCGGTCCG
CTGCATGCGT TCGAGTTGAC GAAGGCGATG ATCGAGGCTG GCGCGTCGGG AGTTCACTTC
GAGGATCAAC TGGCGTCGGA GAAGAAGTGT GGGCACCTGG GTGGGAAGGT ACTGGTGCCG
ACATCGCAGT TTATCCGCAC GCTCACGGCG GCGCGCCTGG CGGCTGATGT GCTGGACGTG
CCGACGGTGC TGATCGCCCG CACCGATGCG CAGGCAGCGA CGCTGCTCCT GTCTGATGCC
GATGAGTACG ACCGCCCCTT TATCACCGGT GAACGCACAC CGGAGGGCTT TTACCGGGTG
AAGAGCGGGC TGGATGCGGC AATCGCCCGT GGTCTGGCGT ATGCGCCCTA TGCCGACCTG
ATCTGGTGTG AGACGGCGCA TCCCGATCTG GACGAGGCAC GGCGGTTCGC CGAGGGAATC
CACGCGAAAT TCCCCGGCAA GATGCTGGCG TATAACTGCT CGCCGTCGTT CAACTGGAAA
CGCTACCTGG ATGAAGCGAC CATCGCAACG TTCCAGCGCG AACTTGCAGC AATGGGGTAC
AAGTTCCAGT TCATCACGCT GGCTGGCTGG CATATGATCA ACTACTACGC CTTCGAACTT
GCAAAAGCGT ATGCTGCCGA GGGAATGACC GCGTATGTGC GATTGCAGCA GGCGGAGTTT
GCGGCTGAGC AGCATGGGTA TACCGCAACG CGCCATCAGC GCGAGGTGGG AACCGGCTAT
TTCGATGAGG TGTCCACCAT CATTTCTGGC GGTCTCTCCT CAACAACGGC GCTCGCCGGT
TCGACCGAAG AAGAGCAGTT TCATTGA
|
|---|
| Protein sequence | MSAVNRDQEI AELERRWATD PRWQGIRRDY SAADVVRLRG TLKIEYTLAN VGARRLWDLL
QTEPYVATFG ALTGAQATQM VRAGIKAIYM SGWQVAADAN LAGQTYPDQS LYPSNSVPAL
VRRINNALMR ADQIHASEGH NDIYWYAPIV ADAEAGFGGP LHAFELTKAM IEAGASGVHF
EDQLASEKKC GHLGGKVLVP TSQFIRTLTA ARLAADVLDV PTVLIARTDA QAATLLLSDA
DEYDRPFITG ERTPEGFYRV KSGLDAAIAR GLAYAPYADL IWCETAHPDL DEARRFAEGI
HAKFPGKMLA YNCSPSFNWK RYLDEATIAT FQRELAAMGY KFQFITLAGW HMINYYAFEL
AKAYAAEGMT AYVRLQQAEF AAEQHGYTAT RHQREVGTGY FDEVSTIISG GLSSTTALAG
STEEEQFH
|
|---|
| |