Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RoseRS_4089 |
Symbol | |
ID | 5211072 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Roseiflexus sp. RS-1 |
Kingdom | Bacteria |
Replicon accession | NC_009523 |
Strand | - |
Start bp | 5128348 |
End bp | 5130960 |
Gene Length | 2613 bp |
Protein Length | 870 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 640597677 |
Product | ABC transporter related |
Protein accession | YP_001278383 |
Protein GI | 148658178 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1134] ABC-type polysaccharide/polyol phosphate transport system, ATPase component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.591422 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.870036 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCGATTT CCCCTCCGAC CGACGATGTC GTCATCAGTG TGCGCAACGT CGGTAAGATG TACCGCATCT ACGACCATCC GCAGGACCGA CTCAAGCACA TGCTGCTGTG GCGTTTCGGG CGGCATTACG GGCGCGAATT CTGGGCGCTG CGCAATGTCA GTTTCGAGGT GCGGCGCGGT GAGATGGTGG GGATCATCGG GCGGAACGGG AGCGGCAAGA GCACGCTGTT GCAGATCATC GCCGGCACGC TGGCGCCGAC TGAAGGCGAG GTGCAGGTGA AGGGGCGGGT GGCGGCGCTG CTGGAGTTGG GGAGCGGCTT CAACCCGGAG TTCACGGGGC GCGAGAATGT GTATCTCAAC GGTGCGATCC TGGGGTTGAG CCGGGAGGAG ATCGATGCAC GCTTCGATGA CATTGCCGCA TTCGCGGACA TCGGCGAGTT TATCGATCAG CCGGTGAAGT TCTACTCCAG CGGCATGGTG GTGCGGCTGG CGTTTGCAGT GCAGGTGCAT GTCTCTCCCG ATATCCTGAT CGTCGATGAA GCGCTGGCTG TGGGGGATAT TGCGTTTCAG TCGCGCTGTC TTGACAAGAT CAAGCAACTG ACCGATTGTG GTGTTACGAT TGTATTTGTT ACGCATGACA TCGGGACATT TCAGAACCTG TGCACTTATG GATATCTACT TCACCATGGA ATGCTGTTTA GCAGCGGTCG ACCTGCCCAG GTTGCGATGC AGTACTACGA ACTGATGCGA GAGAGTGAGC ATGCCCGCCA GCGCCTGATG GCGTCACCTG GCGACGCCGA AGAGGTGCAG CATGAACTGC GTCGCCGCGA GGAGGAGATC AAACGAAAGA CTGGTGCAGG CGAGTACCGG TTTGGTACGG GCGCAGCACG AATTGTGGAC TATTGTGTGC TGGATACGGA AGGTCGCGAG ACGGCCTCTC TTTTTGTCGG CAAACCTTTT CGGGTGGTGA CGACGATTGA GTTTTATGAT CATGTCGAGA ATATTGCGAT TGGTATTATG TTTCGTAACG CGCAGGGGCA GAACCTTATG GGGATGCACT CCTATATAGA GCACCGTGTT AATTTCGGTC CGCACGATGC CGGTGAGCGT CTGGAGATCG GTTGTGAACA GATCATGCTC CTCAATCCCG GAGACTATCT TCTCAATATC GGTATTGCTG ATTTCCGCAG CGATTATGAC TTTACCAACC TTGACTCTCG CAATAACCTG ATGAAGGTGA CGGTGGCTGG CAAGCCGCTC GGATACGGGT TGATCCATAC ACGTCCGCTA TTCTGGAGTG GTGGCAGAAC GCCAGTTCAA TCCTGGCAGA GTATGGCGTG GAAGTCGTGG GAGGAGTGGA CGCTGGAGCG TTGTGAAAAA TATGCGCCCG ATGCGCGTCG TATTCTGGAG ATCGGTGGTC AGGGCGCGGA ACTGGCGCGG TTTCTTGCTC AACGGGATCG TCAGTTGACG ACGCTGAATT TTCCAACCGG CGATATTTGC CGTCCGACGC CTTATGTCGA TAGCGCATTC GATCTGATTG TATGTAAAAT GACATTCGAG CATCTGTACG ATCCGTTCGC CGCTGCCGCC GAAATAACCC GATTGCTGGC GCCGGGCGGT ATCTTGTTAC TCTCAACCGT ATGGTCCTGG CGGTATCACA CGGCGTCGGG CTTTGATGAT TACTGGCGCT TTTCGACTGC GGGGCTTATG CAACTCTTTC CGCGCCTTAC AATCGTTGAA ACAGGATATG ATCTGGACGA TCGGCGCAAA GATTGTCGCT TTGATGGGGT GCCGGTAGAT GAACTTGGCG GGTGGCGTGA GCACTGGTAC GTGTACCTTG TCGCAAAAAA GCCGGACATT TCAGAATCCT TGTCAGATCA GGTCATGCCA TACCGTTTTC CGCGTCACGT TCTCAATTAC ACCCTCAATG ACATCAAAAC GATATACGAA TCGATTCTCG CAGATCCTGT TATCCAACCT GTTATCGACG AGATTATGAG TCATACGAAT GAATCAGTGC GAGAAAGGGG TATTGCGAGT GGTGCAACTG AAGAGCGCGC TTTGCCCGGC GATCCACAAT TCGTATCGAC AGGCTATTAT CGAATGATGC TCGGTCGGTA TGCGTTCGCG GGTGCAATGT TTTGTCGTGG CGCCGAAGTT CTTGACGCAG GAAGCGGGTT GGGATGGGGC GCATTTCTGG TGTCGCATTT CGCGCGAAGG GTAACTGCTT TTGATAGAGA GCCGGAACTT GTTGCTTTTT GCCGGGAAAT CTGGCGTGCG CAAAACATTC TCTGGTCTGT CGGTGATATG TGTGACCTCT CGTTTTTGAC CGACATGCGC TATGATGTTG TGCTTGGTAT GGAAGTTATT GAGCACCTTT CCCGTGATGA TGGCGAGCGG TATATTGCTG AAGCGGCGCG CGTGGTGCGT CCTGGAGGTG TTTTTATCGG CACTTCATAT TTTCCTGTGA GTCGTGATGA GGCGCTGGCT GCGCAGGCTA ACAATCCTGC GCATCTGCAT ATTTTTACGT CTGATGAGAT GCTGATGCTT CTTCGCCGGT ACTTCAGTAA TGCGGTCATT ATCGGTTCCT GGATGTTTAT TGCAGTGAGG TGA
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Protein sequence | MPISPPTDDV VISVRNVGKM YRIYDHPQDR LKHMLLWRFG RHYGREFWAL RNVSFEVRRG EMVGIIGRNG SGKSTLLQII AGTLAPTEGE VQVKGRVAAL LELGSGFNPE FTGRENVYLN GAILGLSREE IDARFDDIAA FADIGEFIDQ PVKFYSSGMV VRLAFAVQVH VSPDILIVDE ALAVGDIAFQ SRCLDKIKQL TDCGVTIVFV THDIGTFQNL CTYGYLLHHG MLFSSGRPAQ VAMQYYELMR ESEHARQRLM ASPGDAEEVQ HELRRREEEI KRKTGAGEYR FGTGAARIVD YCVLDTEGRE TASLFVGKPF RVVTTIEFYD HVENIAIGIM FRNAQGQNLM GMHSYIEHRV NFGPHDAGER LEIGCEQIML LNPGDYLLNI GIADFRSDYD FTNLDSRNNL MKVTVAGKPL GYGLIHTRPL FWSGGRTPVQ SWQSMAWKSW EEWTLERCEK YAPDARRILE IGGQGAELAR FLAQRDRQLT TLNFPTGDIC RPTPYVDSAF DLIVCKMTFE HLYDPFAAAA EITRLLAPGG ILLLSTVWSW RYHTASGFDD YWRFSTAGLM QLFPRLTIVE TGYDLDDRRK DCRFDGVPVD ELGGWREHWY VYLVAKKPDI SESLSDQVMP YRFPRHVLNY TLNDIKTIYE SILADPVIQP VIDEIMSHTN ESVRERGIAS GATEERALPG DPQFVSTGYY RMMLGRYAFA GAMFCRGAEV LDAGSGLGWG AFLVSHFARR VTAFDREPEL VAFCREIWRA QNILWSVGDM CDLSFLTDMR YDVVLGMEVI EHLSRDDGER YIAEAARVVR PGGVFIGTSY FPVSRDEALA AQANNPAHLH IFTSDEMLML LRRYFSNAVI IGSWMFIAVR
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