| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3980 |
|---|
| Symbol | |
|---|
| ID | 5210963 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Roseiflexus sp. RS-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009523 |
|---|
| Strand | - |
|---|
| Start bp | 4978646 |
|---|
| End bp | 4981852 |
|---|
| Gene Length | 3207 bp |
|---|
| Protein Length | 1068 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 640597571 |
|---|
| Product | non-specific serine/threonine protein kinase |
|---|
| Protein accession | YP_001278277 |
|---|
| Protein GI | 148658072 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.863358 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.858201 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGAATA TTCTCTCGGC TGACATATTG GACATCGATC ACATTCTGCT ATCGACCTCA
CAAACGGTTG TTCAACAGGG TCGGCGTTAT TACGAACGAG GGCAGGTGGA AGTCGAGCGC
GTCGATACCG ATAGCGCGCT GATCAATGTC TTCGAATCGC CGGGAGTGGC GCATCAGGTC
GTTCTTCGTC TGCACAACCG CCAGATCTTC GTCAGTTGCA CCTGCCCGCA GCGGCATTAC
TGGACGTTCT GCCGTCATCG CGTCGCTGCG ATTCTGGCGC TCCGTGATTA CCTGATAGCC
CATCCCCCCA GCATCTGGCG CGCCGTGATC GGCGAGGCGG TCAGAGCGCA ACCCCAACGC
AAGCCGACTG CGCAGCCAGC ATGCATCGTC TTCAGTCTGC AATACGCTTC GACCGCCTGG
ACAATCGTTC CATATGCGAT CCCGCTGCGG CGCCTGCCAC CGGAAGCCCT GGGTGATCAG
GAAGAACTCG CCGCTGCCAT TGCTGCGCTG AACCTGTCGC ACGAGGCGCG CCTGATCCGC
TCACGCATCT CCCGGCAGAC GTATCCCCAC GCATCCTTCG AGACGATTAT CGCCGTCAAT
ATGGCGCTCG CCACTGCTGA AGGGTTCCTG TACCACTATA CCAGCGATGA TGAGTCAGGT
GCAGTGTACG ATCCGCTGTT ACTGCTCCTT GCGGGGCAAC TGGCGTACCT TGGCGATGAG
GGCGATCCGT TGCAACATCG CATCCGCATC ATGACCGATC CGGCGTCGGT CGAACTCCGG
ATCGAGCAGA ACGACCGGGA TGCGATCCGT ATGCGACTGC ACCTGAACGT CGCCGGTGAA
TCGATCCCGC TCGATCCGCG CACAACCTAT GTATTCAGCA ACAGTCCGCT CTGGCTGATA
GTGGATGACC GATTGATCCC GGTGAGCGAC CCTCACGGCG TCGCCGCTCT GCTTATCAAT
CACCCCGACC TGACGATCCC TGCGCATGAG CAGGACGAGT TCTTCGATCA GTATCTGCTG
CCGCTGGCTG AGCGGATGAC GCTCTGTGGC GATCTGTTGC GCTGGGAAGA GATCGATGTC
TCGCCAACCC CGCGCCTGTA TCTGAGCGAA ACGAACGGCG CGCTTCTGGC AGACCTGCGC
TTTGCCTACG GCGAGTTCGA AGTACCGGCT GAAGTGAACC CGCCGCCGTA TGTCGTTCGC
CGGCAGGCAA ACACGTTCAC CCTGATACGC ATCCGGCGCC GCCCTGAAGA AGAAGCCGCA
TTGCTGCGCG ACATCGGCAG TCCGACATAT GGTTTGAAGA AAGGCGCAGA GATCGGTCGG
TTCGAACTGC GCAAGGCGGT GCATCCGCTC GATTTTCTGA TCCATCGCAT TCCGATGCTC
ACCCGGCAGG GTGTAGAGGT CTTTGGCGAG GATCAGATCA AAGCGGCGCG GGTCAACCGC
AACCAACCGC AGATCTCGTT CCGTGTTAGT TCCGGCATCG ACTGGTTCGA CCTGGAAGCG
GTGGTTCGCT TTGGCGATCT CGAAGCGTCG CTCAAAGAGG TGCGCCGCGC CATTCGCCGC
CGCCAGAACT ATGTGCGCCT GGCGGATGGC GCGATCGGCG TCATTCCCGA TGAGTGGATC
GAACGCTACC GTCACCTGTT TGAACTGGGG GAAGATACCG AAACGGGTGT CCGCCTGACC
AGAGGGCACC TGACATTGCT CGACCAACTC CTCGCCGAAT CCGACCATGT CCAGACCGAT
GAGGAGTTTG AGCGCCAGCG GGAGCGCCTG CGATCCTTTG AGCGCATCCA GGATCAACCG
CTGCCGCGCG GATTCCGCGG CGAACTGCGT CATTACCAGC GCGCAGCGTA CAACTGGCTC
CACTTCCTCA ACGAATACGG CTTTGGCGGA TGCCTGGCGG ACGACATGGG CACCGGCAAG
ACGGTCTGCA CCCTGGCGTT CCTGCAATCG CTCGAAGAGC GCGATCCCGA CGGTCCTGCC
AGTCTGATCG TTATGCCGCG CTCGCTGCTG TTCAACTGGG AACGTGAAGC TGCGACCTTC
ACGCCCGATC TGCGCGTTGC CGTCCATCAC AGCGCCGTGC GGTCCCTCAA CCCGGCGCAG
TTCGACAGGT ACGACCTGGT GTTGACGACC TACGGCACGA TGCTGCGCGA CATCGAACTG
CTGCGTCGTT ATCGCTTTCG CTACGTCATC CTCGACGAAT CGCAGGCGAT CAAGAATCCG
CTGGCGGAAA CTGCAAAAGC GGCGCGCCTG CTGAACGCCC AACGCCGCCT GGCGCTCACC
GGCACCCCGG TCGAAAACTC GACGCTCGAA CTCTGGAGCC AGTTCGCCTT TCTCAATCCC
GGACTGCTCG GCAACCTGGA TTATTTTCGT GAAACGTTCG TGACTCCCAT CGAAAAGAAG
CAGAGCGCCG ATGCCGCCCA GTTCCTGCGC AAACTGGTCT ACCCGTTTAT TCTGCGCCGC
ACGAAAGACC AGGTGGCGCC GGAATTGCCG CCGCGCAGCG AACGGGTGAT CGAAGTCGAG
ATGGAACCGG CGCAGCGCCG CCTGTACATC AAACAGCGCG ACTACTATCG CGCACTGCTG
CTGGGGCTGA TCGATAACGC CGGGATCGAC AACGCTCGCA TGCAGGTGCT CGAAGGATTG
CTGCGCCTGC GCCAGATCTG CAACCATCCC CGCCTCATCG AGCCAGATTT TCGCGGATCG
TCGGGCAAGT TCGAACTGCT CATCGAAACG CTCGAAACGC TGGCTGCCGA AGGGCGCAAG
GCGCTGGTCT TCTCCCAGTT CGTTCAGATG CTCACCCTCA TCCGCGAGGC GCTCGACGCA
CGCCGCATTC CGTATGCCTA TCTCGACGGG CAGACCCGCC AGCGTCAGCA GGAGGTCGAC
CGCTTCCAGA GCGATGAAAC CCTCCCTTTC TTTCTGATCA GCCTGAAAGC TGGCGGCGTC
GGGCTGAATC TGACCGCTGC CGATTATGTC ATCCACGTCG ATCCCTGGTG GAACCCGGCA
GTCGAGATGC AGGCAACCGA CCGCACCCAC CGCATCGGTC AGGAAAAACC GGTCTTTGTC
TATAAACTCG TGACCCGCGA CTCGGTTGAA GAGAAGATTC TGCATCTCCA GAATCGCAAA
CGTGAACTTG TTGAACAACT CATCACTGCG GACGCCAGCA TGCTCAAAGC GCTCACACGC
GAAGATGTCG AGGCGCTGTT TGGGTGA
|
|---|
| Protein sequence | MWNILSADIL DIDHILLSTS QTVVQQGRRY YERGQVEVER VDTDSALINV FESPGVAHQV
VLRLHNRQIF VSCTCPQRHY WTFCRHRVAA ILALRDYLIA HPPSIWRAVI GEAVRAQPQR
KPTAQPACIV FSLQYASTAW TIVPYAIPLR RLPPEALGDQ EELAAAIAAL NLSHEARLIR
SRISRQTYPH ASFETIIAVN MALATAEGFL YHYTSDDESG AVYDPLLLLL AGQLAYLGDE
GDPLQHRIRI MTDPASVELR IEQNDRDAIR MRLHLNVAGE SIPLDPRTTY VFSNSPLWLI
VDDRLIPVSD PHGVAALLIN HPDLTIPAHE QDEFFDQYLL PLAERMTLCG DLLRWEEIDV
SPTPRLYLSE TNGALLADLR FAYGEFEVPA EVNPPPYVVR RQANTFTLIR IRRRPEEEAA
LLRDIGSPTY GLKKGAEIGR FELRKAVHPL DFLIHRIPML TRQGVEVFGE DQIKAARVNR
NQPQISFRVS SGIDWFDLEA VVRFGDLEAS LKEVRRAIRR RQNYVRLADG AIGVIPDEWI
ERYRHLFELG EDTETGVRLT RGHLTLLDQL LAESDHVQTD EEFERQRERL RSFERIQDQP
LPRGFRGELR HYQRAAYNWL HFLNEYGFGG CLADDMGTGK TVCTLAFLQS LEERDPDGPA
SLIVMPRSLL FNWEREAATF TPDLRVAVHH SAVRSLNPAQ FDRYDLVLTT YGTMLRDIEL
LRRYRFRYVI LDESQAIKNP LAETAKAARL LNAQRRLALT GTPVENSTLE LWSQFAFLNP
GLLGNLDYFR ETFVTPIEKK QSADAAQFLR KLVYPFILRR TKDQVAPELP PRSERVIEVE
MEPAQRRLYI KQRDYYRALL LGLIDNAGID NARMQVLEGL LRLRQICNHP RLIEPDFRGS
SGKFELLIET LETLAAEGRK ALVFSQFVQM LTLIREALDA RRIPYAYLDG QTRQRQQEVD
RFQSDETLPF FLISLKAGGV GLNLTAADYV IHVDPWWNPA VEMQATDRTH RIGQEKPVFV
YKLVTRDSVE EKILHLQNRK RELVEQLITA DASMLKALTR EDVEALFG
|
|---|
| |