Gene RoseRS_3926 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRoseRS_3926 
Symbol 
ID5210909 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRoseiflexus sp. RS-1 
KingdomBacteria 
Replicon accessionNC_009523 
Strand
Start bp4913223 
End bp4914551 
Gene Length1329 bp 
Protein Length442 aa 
Translation table11 
GC content61% 
IMG OID640597522 
Productaminotransferase class-III 
Protein accessionYP_001278229 
Protein GI148658024 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0160] 4-aminobutyrate aminotransferase and related aminotransferases 
TIGRFAM ID[TIGR00700] 4-aminobutyrate aminotransferase, prokaryotic type 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACAACCA TACCTGCAAT GGCGCTACTC GAACAGACAG CGTATCTGTC ACCTGTCTGG 
GCGCGCTACA GCGATATACT CGTTGAGCGC GGCGAAGGGG TCTATCTGTA CGATGTCGAA
GGGCGACGAT ACCTGGATTT CACCTGCGGC ATCGGTGTAA CGAACACCGG GCACTGCCAT
CCGCGCGTGG TGCAGGCGAT CCGCGACCAG GCTGGTCTGC TGCTGCATGG GCAGGCAAAC
ATCGTCTATC ACCGCCCGAT GCTCGAACTG GTCGCCGAAC TGCGCACCAT CGTTCCTTCA
GAACTCGACA GTTTCTTTTT CAGCAACAGC GGCGCAGAGG CGGTCGAGGG CGCGGTCAAA
CTGGCGCGTC AGGCGACGGG ACGCAGCGAC ATCATCGCGT TCGATGGCGG CTTCCACGGG
CGCACCGCAG GCGCGATGGC GCTCACCAGC AGCAAGGGAA AATATCGCCA TCGGGTCGCA
CCATTGCCTG CAGGGGTGCA TTTCGCGCCG TATGCTGCAT GCTACCGCTG CGCCATTGCC
CGCGCAGCCG GCGCCGACAC GGCAGCGATC TCCGGCGCAG CGCCCGACGA CCTGGGGTGC
TGCGGCAATC CGCTGCATCA GATCGAACAC CTGCTGCATA CCCAAACGAC ACCGGAGGAC
GTGGCAGCAA TCCTGGTGGA ACCGGTGCTC GGCGAGGGCG GCTATATCGT TCCGCCGGTC
TCATTTCTTC AGGGGTTGCG GCGCATCTGC GACCGCTACG GAATACTCCT GATCGTGGAC
GAAGTGCAGA GCGGATTTGG GCGCACCGGT CGTTTCTTCG CTATCGAACA CTTCGGTATC
GTTCCCGACA TAATGACGGT TGCCAAAGGG ATTGCATCAG GACTTCCGCT TTCTGGTATT
ATTGCACGGC GCGCCATCAT GGAACGCTGG CAGCCAGGAT CGCATGGCGG CACCTACGGC
GGCAATGCAG TCGCGTGTGC TGCTGCGGTC GCCACGATTC GGGCGATGCG TGAAGAGCGC
ATGGTCGAAA ACGCATCGCG TCAGGGCGTG CTGTTGAAAA CAGAACTGTT GCGGATCAAG
GCGCAGTCTC CATCGATTGG CGATGTACGC GGAATAGGGT TGATGGTTGG CGTCGAACTG
ACGGCGGCGG ATGGCACACC CGATACTGCG CTGGCGAAAC GCACTGTGGC GGCATGCCGC
GATCGGGGGT TGCTCCTGTT GACCTGCGGA CCATACGACA ACGTCATCCG TTTCATTCCG
CCGTTAATCG TCGAGGAACA TCAGATTCGC GACGCCGTGC GCATCTTCGA GGAAGCGCTG
GCGTCTTAG
 
Protein sequence
MTTIPAMALL EQTAYLSPVW ARYSDILVER GEGVYLYDVE GRRYLDFTCG IGVTNTGHCH 
PRVVQAIRDQ AGLLLHGQAN IVYHRPMLEL VAELRTIVPS ELDSFFFSNS GAEAVEGAVK
LARQATGRSD IIAFDGGFHG RTAGAMALTS SKGKYRHRVA PLPAGVHFAP YAACYRCAIA
RAAGADTAAI SGAAPDDLGC CGNPLHQIEH LLHTQTTPED VAAILVEPVL GEGGYIVPPV
SFLQGLRRIC DRYGILLIVD EVQSGFGRTG RFFAIEHFGI VPDIMTVAKG IASGLPLSGI
IARRAIMERW QPGSHGGTYG GNAVACAAAV ATIRAMREER MVENASRQGV LLKTELLRIK
AQSPSIGDVR GIGLMVGVEL TAADGTPDTA LAKRTVAACR DRGLLLLTCG PYDNVIRFIP
PLIVEEHQIR DAVRIFEEAL AS