| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3878 |
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| Symbol | |
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| ID | 5210860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | + |
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| Start bp | 4855015 |
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| End bp | 4857693 |
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| Gene Length | 2679 bp |
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| Protein Length | 892 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 640597473 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001278181 |
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| Protein GI | 148657976 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCACCAC ACATTCTGGT TATTACCGAC GATGATGACA ATCGGGCGCT GCTCATTCGC
CTCTTGCAGA GCCAGGGGCA ACAGGTGGCG GTTGCCGTCG ACGGGCAAGA AGCACTGGAA
CTCCTTTCCC GTCAGGTGTT CGATCTGATC CTGCTCGACC TTGACGCCGC CGATCCAGAT
ATGCGCGAGG TCGAGACGCT GCGACAACTC TGCCAGTACG CGACGGTTCA CAGCATACCG
GTGGCAGTCA TCGCCGACGC TGGCAATCTC GATCTGATTA CGCGATGCAT TGAACTTGGC
GCAGATGATT ATCTGCTCAA ACCGTTCAAC GAGACGTTGC TGCGTGCGCG TGTCCATGCT
CTGCTCGAAC GAAAGGCGTG GCGCGACCGC CAGCGCGCGT TGCCGGAGGA ATCGCCGCGT
GCGCCCGCTG ACGCAGCGGC AGAGGTTGCA CCGTCTGCTG GCGGTCTATG GTTCGCGCTG
CTCGATGCTC TGGGGCGCGC CTGGCGCGAT CAACGCCGCA TCACCACCGA ACTCCAGGCG
CTCGAAACAC GGATCGCGGA ATATAGTGCG ACTGTTGAGG ACACTGCGCT CGCGCTCCGG
CAACAGACGA TCACGCTCCA CGCGATCCTG GAGAGCCTCA GCGATGCTGT CGTCGTGATC
GATCGTGAAG GAAATCTGGT GCACGCCAAC CCGGTAGCGC ATACTCTCTT TGGCGACCGT
CTTCTCGATG TAACGCCCCA GGCAACCGCA CCAGCGCTGC TCGACACGGA TGGCGTTCCG
TGTGCGACCG ATCAACTGCC GCTTGCCATT GCGCTGCGTG GCGTGGAGGT CGATAGCAGC
GAGTTTCTGC TGGCTTCGGT CGATCCTGAT GCTGTGCGTC GCATCAGGGC AACTGCCCGT
CCGCTGCGCG ACAGCAATGG CGACATAATT GGATCAGTTG CCATCTTCCG CGACATCACC
GTATCGTTTC AGATGGCGCA GGCATTACGC GCCAGCGAAG AACGGTACAC GCTGACCGTG
CAGGCAACCG GCGACGGCGT ATGGGAATGG GAACTGCGCA CCGGAATAAT GACATTCTCC
CGGCGTTGGA AGGAAATGCT GGGCTTTCAG GATCAAGAAA TCGGAAACCT TCCTTCAGAA
TGGTTCAACC GGGTGCATCC CGATGATCGC GATGGGCTGG ATGTGCGCCT GACCGCCTAT
CTCCGACGGC TGATCACCAG TTTCGAGCAT GAATATCGCA TATTGCACCG TGACGGCGCC
TACCGCTGGA TGCGCTGTCG GGGCATTGCG ATCTGGGATG CTGACGGAAA TGCGGCGCAT
ATTGTCGGCT CGCAAACCGA TATAACCGAT CGCAAACTGG CGGAACAACG TCTGTGGTAC
AACGCCTTCC ACGATAGCCT GACCGGTCTT GCCAACCGTG CGCGCTTCAT GGATCGTCTG
GGGCATGTGA TTGCGCGCGC GCGACGCAGC GCGTCCCCCC CCTATGCCGT TCTGATCCTC
GATCTCGACC GGTTCAAACT GATCAATGAC AGCCTGGGGC ATCTCGTCGG CGATCAACTG
CTGATCGCCA TCGCCCGTCG TCTTGAGCAA AGCCTGCGAC CGGGCGATAC CCTGGCGCAC
CTCGGTGGCG ATGAGTTCGC CGTGCTGCTC GAAGATCTGA GCGAGCCGCA TGCCGCTGTG
AATGTTGCAG AACGCATCCT GCATCTGTTC GAAGAACCGT TTCATTTGAA CGAGCACGAG
GTGTTCAGCA GCGCCAGCAT CGGGATTGCG CTCAGCGACA ATCTGCGCTA CCACTCACCA
TCCGATATGC TACGCGACGC CGATACGGCA ATGCACCATG CGAAAATGGA AGGGCGGGCA
CGCTATGCCG TTTTCCATCC GACCATGCAT GACCGCGCGC GCCCCCGCCT GCAAATCGAG
ATCGATCTGC GTCGCGGCAT CGAACGCAAC GAGTTCTTCG TCGTCTACCA GCCGATCGTC
GAACTCAGCA CCCAGCGAAC GGTTGGCTTT GAGGCGCTCC TGCGATGGCG GCATCCACAA
CGCGGCATTG TGACCCCTGC GGAGTTCATC GCCATCGCCG AGGAGACGGG ACTGATCGTG
CCCATCGGTC AGATGGTGCT GCGTGAAGCA TGTCGTCAAC TGAGTGCGTG GAAGCAGCGG
CATCCTGAAC GAACACTGGC GATGAACATC AACCTGTCGC CCCGTCAGAT TGCCGATCCT
GATCTGGTTC ATCGTACCGC AGCGCTGATC GATGAGTATC GCCTCGATGC GGATGCGCTG
CGCCTCGAAA TTACCGAGAC GGCGATCATC GAACATGGGG ATGCCGCCGG TCGGGTGTTG
CAGCAGCTGC GTGCGCTGGG GGTGCAGATC TGCATCGATG ACTTTGGCAC CGGCTATTCG
TCGCTCAGTT ATCTTCACCG CTTCCCGATT GCAACAATCA AAATAGATCG TTCCTTCGTC
AGTCAGATTC ATCGCAGCCA CGAGAACACC GAAATTGTCC GCTCCATCAT CTCGCTGGCG
CGCTCGCTGG GAATGGCGGT CATCGCCGAG GGAACCGAAA CCGAGGAGCA GTTGCTCCGC
CTCCGCTCGA TGTCGTGTGC GTATGGGCAG GGATGGCTGT TCGCACACGC GCTCGAACCG
GCGGAAGCGA CCGCAATGCT CGATCGCGAG ACAGAGTAA
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| Protein sequence | MPPHILVITD DDDNRALLIR LLQSQGQQVA VAVDGQEALE LLSRQVFDLI LLDLDAADPD
MREVETLRQL CQYATVHSIP VAVIADAGNL DLITRCIELG ADDYLLKPFN ETLLRARVHA
LLERKAWRDR QRALPEESPR APADAAAEVA PSAGGLWFAL LDALGRAWRD QRRITTELQA
LETRIAEYSA TVEDTALALR QQTITLHAIL ESLSDAVVVI DREGNLVHAN PVAHTLFGDR
LLDVTPQATA PALLDTDGVP CATDQLPLAI ALRGVEVDSS EFLLASVDPD AVRRIRATAR
PLRDSNGDII GSVAIFRDIT VSFQMAQALR ASEERYTLTV QATGDGVWEW ELRTGIMTFS
RRWKEMLGFQ DQEIGNLPSE WFNRVHPDDR DGLDVRLTAY LRRLITSFEH EYRILHRDGA
YRWMRCRGIA IWDADGNAAH IVGSQTDITD RKLAEQRLWY NAFHDSLTGL ANRARFMDRL
GHVIARARRS ASPPYAVLIL DLDRFKLIND SLGHLVGDQL LIAIARRLEQ SLRPGDTLAH
LGGDEFAVLL EDLSEPHAAV NVAERILHLF EEPFHLNEHE VFSSASIGIA LSDNLRYHSP
SDMLRDADTA MHHAKMEGRA RYAVFHPTMH DRARPRLQIE IDLRRGIERN EFFVVYQPIV
ELSTQRTVGF EALLRWRHPQ RGIVTPAEFI AIAEETGLIV PIGQMVLREA CRQLSAWKQR
HPERTLAMNI NLSPRQIADP DLVHRTAALI DEYRLDADAL RLEITETAII EHGDAAGRVL
QQLRALGVQI CIDDFGTGYS SLSYLHRFPI ATIKIDRSFV SQIHRSHENT EIVRSIISLA
RSLGMAVIAE GTETEEQLLR LRSMSCAYGQ GWLFAHALEP AEATAMLDRE TE
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