| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RoseRS_3848 |
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| Symbol | |
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| ID | 5210830 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Roseiflexus sp. RS-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009523 |
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| Strand | - |
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| Start bp | 4806619 |
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| End bp | 4809546 |
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| Gene Length | 2928 bp |
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| Protein Length | 975 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 640597444 |
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| Product | excinuclease ABC, A subunit |
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| Protein accession | YP_001278152 |
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| Protein GI | 148657947 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0178] Excinuclease ATPase subunit |
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| TIGRFAM ID | [TIGR00630] excinuclease ABC, A subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00424286 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 0 |
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| Fosmid unclonability p-value | 0.0000162445 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | unclonable |
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Sequence |
| Gene sequence | ATGTCTGCTG ATCGGATCGT GGTGCGCGGG GCGCGCGTCC ATAATCTTAA GAATATCACG
GTCGCCATGC CGCGCAATGC GCTGGTGGTG ATCACCGGTC TCTCCGGCTC CGGCAAGTCG
TCGCTGGCGT TCGATACGAT TTTTGCCGAA GGTCAGCGTC GCTATGTCGA ATCGCTTTCC
GCCTATGCCC GCCAGTTCCT TGGTCAGATC GACAAGCCGG ACGTTGACGC CATCGAAGGA
TTGTCGCCTG CCATTGCCAT CGATCAGAAA GGGCTGGCGC GCAATCCGCG CTCAACCGTC
GGCACCATTA CCGAAATCTA CGATTATCTG CGACTGCTGT TTGCCCGGAT TGGACGACCG
CACTGCATCC ACTGCGGTCG TCCGCTCACG CGCCAGTCGG CGCAACAGAT GATCGATACG
ATCCTCGGTC TGCCGGGTGG CAGCCGCGTG CTGCTGCTTG CGCCCCTCGT TCGCGATCAG
AAGGGCGACC ATCAGACCCT CTTCGATCAG GTGCGCAAGC AGGGGTTCGT CCGTGTGCGC
GTCGATGGCG AGGTGCGCGA TCTTGGCGAC GACCTGCGCC TTGACCGTCA TCGTCCGCAT
ACGATCGAGG TCGTTGTGGA CCGGCTGGTC ATTCCATCAG CCGATCCCTC GCAGCAACAG
ACGCAGTTTC GCGTGCGCGT CGCCGATTCG GTCGAAACGG CGCTGCGGGT CGGCGGCGGC
GTGGTGATCG TCCAGATCGT CGGCGGTGAT GAACTCACTC TGTCGCAGCG TTACGCCTGC
CCGGTGCACG GACCGGCTTC CATCGGGGCG CTCGAACCGC GCGATTTTTC ATTCAACAAT
CCATCGGGCG CCTGCCCTGC CTGTGATGGT CTGGGAAGCG TGCTGGAGTT CGACCCTGAA
CTGGTGATCC CCGACCGATC CCGTTCACTT GCGGAAGGCG CCGTCGCGCC CTGGTCGAAC
GTCAGTCGCG CGCAGCGCCG CTACTTCGAC GATCTGCTGA CATCACTCGC CGGGCACCTC
GGTTTTTCAC TGCACACACC AGTGCGCGAT CTGCGCCCGG AGGTGATCGC TACGCTGCTC
TACGGTTCTA ACGGCGATGT GATGCCACTC CGTTACCACA TACGCGGCGA AGAGCGCATG
GTTGAGGCGC CGTTCGAGGG GGTTATCCCC GGTCTGCGCC GTCGTCTGGC GGAATGCACC
GATGAAACCG AACGCGCACA GATTGAGCAG TTTATGACCC CGCGCACATG CCCGGCATGC
AACGGCGCGC GACTGCGTCC CGAACTGCTC GCCGTCACCG TCGCCGGATA CACGATTGCG
CAGGTGGCGG CGCTCCCTGT CGCTGAAGCG TGGTCGTGGG CGAAAACACT GGCTGCCGAC
GTTGACGAGG TGGTCGCCCG CTGGCGTGAG ACGCGCGAAA GCGACCTGCG CTCGTCCATC
TATGCTCTTA CGGTGCGCGA ATGTCAGATC GCGGCGCCAA TCCTGAATGA CATCTGCGCC
CGACTCCGGT TTCTAAATGA AGTCGGGCTG GGGTATCTCA CGCTTGACCG CACTGCGACG
ACCCTTGCTG GCGGCGAGGC GCAGCGCATT CGCCTGGCGA CGCAGATCGG CGCCGGGCTG
AGCGGTGCGC TCTATGTGCT GGACGAGCCG AGCATCGGGT TACACCCACG TGATACGGCG
CGCCTGCTCA ACACGTTGCG TCAACTGCGC GACCTGGGCA ACAGCGTGCT GGTTGTTGAA
CACGACGAAG AGATCATTCG CGCAGCCGAC TGGATCGTTG ACATTGGTCC CGGTGCGGGA
GAGCGCGGCG GCGAGGTGAT CGTCAGCGGT CCGCTCGATG CAGTGCTGGC AGAGCCGCGC
TCACTTACCG GACAGTACCT CTCCGGCAAA CGCACGATTG CCGTGCCACG CCGCCGACGA
CCCGGCAACG GCGCATTCCT GATGATCAGG GGAGCGCGCG AGCACAACCT GAAGAACATC
GACGTCGCCA TCCCGCTGGG ATGTCTGGTG GCAGTCACCG GCGTCAGCGG GTCTGGCAAA
TCGACCCTGA TCAACGACAC CCTCTACCCG CGGCTGGCGC AGGCGCTCCA TGGCGCGCGC
GCGCGCCCCG GCGCCCACGA CGCAATCTAT GGCATCGAAC AGATCGATAA GGTGATCGAC
ATCGACCAGT CGCCCATCGG GCGCACGCCA CGCTCCAACC CGGTCACCTA CACCAAGGCG
TTCGACCCGA TCCGCAAATT GTTCGCGCAA ACGCCTGAAG CGCGCGCGCG CGGCTATGAT
GCCAGTCGTT TCTCGTTCAA CATTCCCGGA GGACGGTGCG AGCACTGCAA CGGCGAAGGA
TTGATGCAGA TCGAAATGCA GTTCCTTCCC GATCTGTACG TCACCTGCGA TGTCTGTCAC
GGCGCGCGCT ACAACCGTGA AACGCTCGAC ATTCGTTACC GGGGCAAGAA CATCGCCGAA
GTGCTCGACA TGACGGTTGA AGAAGCGGCG GCATTTTTCG AGCGTGTCCC ATCCATCGCC
GAAAAGTTGC AAACCCTGAT CGACGTCGGG TTAGGGTATA TTCGCCTGGG TCAACCTGCG
ACCACCCTCT CCGGCGGTGA GGCGCAACGC ATCAAACTGG CGACCGAACT GAGTCGGCGC
GCCACCGGGC GCACCCTCTA CATCCTCGAT GAACCGACGA CCGGCCTGCA CGTCGCTGAT
GTTGACCGGT TGCTGCGCGT CTTGCAGCGC CTGGTGGACG CGGGAAACAC CGTTCTGGTG
ATCGAACACC ATCTCGATGT GATCAAATGC GCCGATTGGG TGATCGACCT GGGACCGGAG
GGAGGCGAGG AGGGCGGGCG TGTTGTCGCC GTCGGCACGC CTGAACAGGT CGCGCGAACG
CCAGGATCGT ACACCGGTCA GTGCCTGGCG CGGGTGGTTG AAGGTTGA
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| Protein sequence | MSADRIVVRG ARVHNLKNIT VAMPRNALVV ITGLSGSGKS SLAFDTIFAE GQRRYVESLS
AYARQFLGQI DKPDVDAIEG LSPAIAIDQK GLARNPRSTV GTITEIYDYL RLLFARIGRP
HCIHCGRPLT RQSAQQMIDT ILGLPGGSRV LLLAPLVRDQ KGDHQTLFDQ VRKQGFVRVR
VDGEVRDLGD DLRLDRHRPH TIEVVVDRLV IPSADPSQQQ TQFRVRVADS VETALRVGGG
VVIVQIVGGD ELTLSQRYAC PVHGPASIGA LEPRDFSFNN PSGACPACDG LGSVLEFDPE
LVIPDRSRSL AEGAVAPWSN VSRAQRRYFD DLLTSLAGHL GFSLHTPVRD LRPEVIATLL
YGSNGDVMPL RYHIRGEERM VEAPFEGVIP GLRRRLAECT DETERAQIEQ FMTPRTCPAC
NGARLRPELL AVTVAGYTIA QVAALPVAEA WSWAKTLAAD VDEVVARWRE TRESDLRSSI
YALTVRECQI AAPILNDICA RLRFLNEVGL GYLTLDRTAT TLAGGEAQRI RLATQIGAGL
SGALYVLDEP SIGLHPRDTA RLLNTLRQLR DLGNSVLVVE HDEEIIRAAD WIVDIGPGAG
ERGGEVIVSG PLDAVLAEPR SLTGQYLSGK RTIAVPRRRR PGNGAFLMIR GAREHNLKNI
DVAIPLGCLV AVTGVSGSGK STLINDTLYP RLAQALHGAR ARPGAHDAIY GIEQIDKVID
IDQSPIGRTP RSNPVTYTKA FDPIRKLFAQ TPEARARGYD ASRFSFNIPG GRCEHCNGEG
LMQIEMQFLP DLYVTCDVCH GARYNRETLD IRYRGKNIAE VLDMTVEEAA AFFERVPSIA
EKLQTLIDVG LGYIRLGQPA TTLSGGEAQR IKLATELSRR ATGRTLYILD EPTTGLHVAD
VDRLLRVLQR LVDAGNTVLV IEHHLDVIKC ADWVIDLGPE GGEEGGRVVA VGTPEQVART
PGSYTGQCLA RVVEG
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